tableby.stats: tableby Summary Statistics Functions

In arsenal: An Arsenal of 'R' Functions for Large-Scale Statistical Summaries

Description

A collection of functions that will report summary statistics. To create a custom function, consider using a function with all three arguments and .... See the tableby vignette for an example.

Usage

arsenal_sum(x, na.rm = TRUE, ...)

arsenal_min(x, na.rm = TRUE, ...)

arsenal_max(x, na.rm = TRUE, ...)

arsenal_mean(x, na.rm = TRUE, weights = NULL, ...)

arsenal_sd(x, na.rm = TRUE, weights = NULL, ...)

arsenal_var(x, na.rm = TRUE, weights = NULL, ...)

meansd(x, na.rm = TRUE, weights = NULL, ...)

meanse(x, na.rm = TRUE, weights = NULL, ...)

meanCI(x, na.rm = TRUE, weights = NULL, conf.level = 0.95, ...)

medianrange(x, na.rm = TRUE, weights = NULL, ...)

medianmad(x, na.rm = TRUE, weights = NULL, ...)

arsenal_median(x, na.rm = TRUE, weights = NULL, ...)

arsenal_range(x, na.rm = TRUE, ...)

gmean(x, na.rm = TRUE, weights = NULL, ...)

gsd(x, na.rm = TRUE, weights = NULL, ...)

gmeansd(x, na.rm = TRUE, weights = NULL, ...)

gmeanCI(x, na.rm = TRUE, weights = NULL, conf.level = 0.95, ...)

Nsigntest(x, na.rm = TRUE, weights = NULL, ...)

Nevents(x, na.rm = TRUE, weights = NULL, ...)

medSurv(x, na.rm = TRUE, weights = NULL, ...)

NeventsSurv(x, na.rm = TRUE, weights = NULL, times = 1:5, ...)

NriskSurv(x, na.rm = TRUE, weights = NULL, times = 1:5, ...)

Nrisk(x, na.rm = TRUE, weights = NULL, times = 1:5, ...)

medTime(x, na.rm = TRUE, weights = NULL, ...)

q1q3(x, na.rm = TRUE, weights = NULL, ...)

medianq1q3(x, na.rm = TRUE, weights = NULL, ...)

iqr(x, na.rm = TRUE, weights = NULL, ...)

Nmiss(x, weights = NULL, ...)

Nmiss2(x, weights = NULL, ...)

N(x, na.rm = TRUE, weights = NULL, ...)

Npct(
  x,
  levels = NULL,
  by,
  by.levels = sort(unique(by)),
  na.rm = TRUE,
  weights = NULL,
  ...,
  totallab = "Total"
)

count(x, levels = NULL, na.rm = TRUE, weights = NULL, ...)

countpct(x, levels = NULL, na.rm = TRUE, weights = NULL, ...)

countN(x, levels = NULL, na.rm = TRUE, weights = NULL, ...)

countrowpct(
  x,
  levels = NULL,
  by,
  by.levels = sort(unique(by)),
  na.rm = TRUE,
  weights = NULL,
  ...,
  totallab = "Total"
)

countcellpct(
  x,
  levels = NULL,
  by,
  by.levels = sort(unique(by)),
  na.rm = TRUE,
  weights = NULL,
  ...,
  totallab = "Total"
)

binomCI(x, levels = NULL, na.rm = TRUE, weights = NULL, conf.level = 0.95, ...)

rowbinomCI(
  x,
  levels = NULL,
  by,
  by.levels = sort(unique(by)),
  na.rm = TRUE,
  weights = NULL,
  conf.level = 0.95,
  ...,
  totallab = "Total"
)

Arguments

x	Usually a vector.
na.rm	Should NAs be removed?
...	Other arguments.
weights	A vector of weights.
conf.level	Numeric, denoting what confidence level to use for confidence intervals.
times	A vector of times to use for survival summaries.
levels	A vector of levels that character xs should have.
by	a vector of the by-values.
by.levels	a vector of the levels of by.
totallab	What to call the total "column"

Details

Not all these functions are exported, in order to avoid conflicting NAMESPACES. Note also that the functions prefixed with "arsenal_" can be referred to by their short names (e.g., "min" for "arsenal_min").

Value

Usually a vector of the appropriate numbers.

See Also

includeNA, tableby.control

arsenal documentation built on June 5, 2021, 1:06 a.m.