asbio: A Collection of Statistical Tools for Biologists

Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.

AuthorKen Aho
Date of publication2016-07-20 03:44:16
MaintainerKen Aho <kenaho1@gmail.com>
LicenseGPL (>= 2)
Version1.3-4

View on CRAN

Man pages

alfalfa.split.plot: An agricultural split plot design

alpha.div: Functions for calculating alpha diversity.

anm.coin: Animated demonstration of frequentist binomial convergence of...

anm.samp.design: Animated demonstration of randomized sampling designs

asthma: Asthma repeated measures dataset from Littell et al. (2002)

baby.walk: Baby walking times experimental data

bear: Grizzly bear litter sizes

bv.boxplot: Bivariate boxplots

caribou: Caribou count data

chi.plot: Chi plots for diagnosing multivariate independence.

ci.impt: Confidence interval for the product of two proportions

ci.mu: Z and t confidence intervals for mu.

ci.prat.ak: Confidence intervals for ratios of proportions when the...

cliff.env: Environmental data for the community dataset cliff.sp

corn: Corn yield data

cuckoo: Tippett cuckoo egg data

D.sq: Mahalanobis distance for two sites using a pooled covariance...

e.cancer: Esophageal cancer data modified slightly to create a balanced...

exercise.repeated: Repeated measures data for an exercise experiment.

G.mean: Geometric mean

HL.mean: Hodges-Lehman estimator of location

H.mean: Harmonic mean

huber.NR: Huber M-estimator iterative least squares algorithm

K: Soil potassium analyses from 8 laboratories

km: Kaplan-Meier survivorship.

life.exp: Mouse life expectancy data.

MC.test: Monte Carlo hypothesis testing for two samples.

modlevene.test: Modified Levene's test

moose.sel: Datasets for resource use and availability

MS.test: Mack-Skillings test

one.sample.z: One sample z-test

pairw.anova: Conducts pairwise post hoc and planned comparisons associated...

pairw.oneway: Welch tests controlled for simultaneous inference

panel.cor.res: Functions for customizing correlation matrices

PM2.5: PM 2.5 pollutant data from Pocatello Idaho.

portneuf: Portneuf River longitudinal N and P data.

potash: Potash/cotton strength data

power.z.test: Power analysis for a one sample z-test

Preston.dist: Preston diversity analysis

pseudo.v: Jacknife pseudo-values

qq.Plot: Normal quantile plots for single or multiple factor levels

rat: Rat glycogen data from Sokal and Rohlf (2012).

savage: Mammalian BMR and biomass data from Savage et al. (2004)

sedum.ts: CO2 exchange time series data

see.ttest.tck: Visualize t-tests

SexDeterm: Fern environmental sex determination data

shade.norm: Shading functions for interpretation of pdf probabilities.

shade.norm.tck: GUI display of probability

simberloff: Compilations of genus and species counts from Simberloff...

SM.temp.moist: Alpine soil temperature and moisture time series

snore: Snoring and heart disease contingency data

stan.error: Variance and standard error estimators for the sampling...

starkey: DEM data from the Starkey experimental forest in NE Oregon.

trim.me: Trim data

win: Winsorize data

world.co2: World CO2 levels, by country, from 1980 to 2006

world.pop: Population levels in various countries since 1980

Files in this package

asbio
asbio/inst
asbio/inst/pictures
asbio/inst/pictures/goat1.pgm
asbio/inst/pictures/goat3.pgm
asbio/inst/doc
asbio/inst/doc/ranef.cov.pdf
asbio/inst/doc/ranef.cov.rnw
asbio/inst/doc/simpson.R
asbio/inst/doc/simpson.rnw
asbio/inst/doc/simpson.pdf
asbio/inst/doc/ranef.cov.R
asbio/NAMESPACE
asbio/data
asbio/data/sedum.ts.rda
asbio/data/caribou.rda
asbio/data/cliff.sp.rda
asbio/data/cuckoo.rda
asbio/data/ipomopsis.rda
asbio/data/bear.rda
asbio/data/moose.sel.rda
asbio/data/exercise.repeated.rda
asbio/data/webs.rda
asbio/data/starkey.rda
asbio/data/bats.rda
asbio/data/bighornAZ.sel.rda
asbio/data/pika.rda
asbio/data/sc.twin.rda
asbio/data/co2.us.cities.rda
asbio/data/Fbird.rda
asbio/data/bombus.rda
asbio/data/enzyme.rda
asbio/data/dO2.rda
asbio/data/trag.rda
asbio/data/baby.walk.rda
asbio/data/juniper.sel.rda
asbio/data/shad.rda
asbio/data/BCI.plant.rda
asbio/data/Glucose2.rda
asbio/data/vs.rda
asbio/data/bone.rda
asbio/data/portneuf.rda
asbio/data/e.cancer.rda
asbio/data/elk.sel.rda
asbio/data/snore.rda
asbio/data/drugs.rda
asbio/data/anscombe.rda
asbio/data/wheat.rda
asbio/data/montane.island.rda
asbio/data/savage.rda
asbio/data/plantTraits.rda
asbio/data/mosquito.rda
asbio/data/myeloma.rda
asbio/data/SM.temp.moist.rda
asbio/data/grass.rda
asbio/data/so2.us.cities.rda
asbio/data/bighorn.sel.rda
asbio/data/anolis.rda
asbio/data/corn.rda
asbio/data/crabs.rda
asbio/data/asthma.rda
asbio/data/potato.rda
asbio/data/fire.rda
asbio/data/veneer.rda
asbio/data/fruit.rda
asbio/data/C.isotope.rda
asbio/data/deer.rda
asbio/data/PM2.5.rda
asbio/data/garments.rda
asbio/data/PCB.rda
asbio/data/wash.rich.rda
asbio/data/cliff.env.rda
asbio/data/beetle.rda
asbio/data/agrostis.rda
asbio/data/world.co2.rda
asbio/data/magnets.rda
asbio/data/potash.rda
asbio/data/ant.dew.rda
asbio/data/SexDeterm.rda
asbio/data/alfalfa.split.plot.rda
asbio/data/K.rda
asbio/data/polyamine.rda
asbio/data/larrea.rda
asbio/data/aids.rda
asbio/data/whickham.rda
asbio/data/simberloff.rda
asbio/data/chronic.rda
asbio/data/mule.sel.rda
asbio/data/rat.rda
asbio/data/Semiconductor.rda
asbio/data/BCI.count.rda
asbio/data/prostate.rda
asbio/data/heart.rda
asbio/data/crab.weight.rda
asbio/data/world.pop.rda
asbio/data/depression.rda
asbio/data/death.penalty.rda
asbio/data/fly.sex.rda
asbio/data/deer.296.rda
asbio/data/life.exp.rda
asbio/data/goats.rda
asbio/data/refinery.rda
asbio/data/goat.sel.rda
asbio/data/frog.rda
asbio/data/bromus.rda
asbio/data/wildebeest.rda
asbio/data/quail.sel.rda
asbio/R
asbio/R/MS.test.R
asbio/R/shade.poi.tck.r
asbio/R/selftest.stats.tck.R asbio/R/r.bw.R
asbio/R/samp.dist.mech.r
asbio/R/bootstrap.r
asbio/R/selftest.treatsamp.r
asbio/R/pairw.fried.R asbio/R/win.R
asbio/R/see.betacdf.r
asbio/R/pairs.panel.functions.R asbio/R/press.R asbio/R/one.sample.t.R asbio/R/selftest.corr.R
asbio/R/see.nbincdf.r
asbio/R/Bayes.disc.tck.r
asbio/R/plotAncova.r
asbio/R/boot.ci.M.R asbio/R/D.sq.R asbio/R/selftest.regapproaches.R
asbio/R/shade.F.tck.r
asbio/R/HL.mean.R
asbio/R/bin2dec.r
asbio/R/samp.dist.snap.tck.r
asbio/R/MCfunctions.r
asbio/R/see.poiscdf.r
asbio/R/see.move.r
asbio/R/shade.chi.tck.r
asbio/R/anm.transM.r
asbio/R/see.nlm.r
asbio/R/ci.strat.R
asbio/R/see.logiscdf.r
asbio/R/MC.test.R asbio/R/selftest.ANOVAsiminf.R
asbio/R/samp.dist.r
asbio/R/BDM.test.R
asbio/R/shade.r
asbio/R/r.dist.r
asbio/R/skew.kurt.r
asbio/R/anm.LVe.tck.r
asbio/R/plotCI.reg.R
asbio/R/rinvchisq.r
asbio/R/see.adddel.r
asbio/R/ci.sigma.r
asbio/R/lm.select.r
asbio/R/modlevene.test.R
asbio/R/bvn.plot.r
asbio/R/see.lmr.tck.r
asbio/R/see.smooth.tck.r
asbio/R/anm.cont.pdf.r
asbio/R/book.menu.r
asbio/R/ci.median.R asbio/R/stan.error.R asbio/R/selftest.H0.R
asbio/R/see.accPrec.tck.r
asbio/R/samp.dist.mech.tck.r
asbio/R/print.ci.R
asbio/R/eff.rbd.r
asbio/R/ci.boot.r
asbio/R/qq.Plot.R asbio/R/ci.prat.ak.R asbio/R/ci.mu.R
asbio/R/transM.r
asbio/R/ConDis.matrix.R
asbio/R/shade.norm.tck.r
asbio/R/anm.loglik.tck.r
asbio/R/sefltest.typeIISS.R
asbio/R/illusions.r
asbio/R/se.jack.r
asbio/R/anm.TM.tck.r
asbio/R/km.R asbio/R/huber.one.step.R
asbio/R/see.M.r
asbio/R/bayes.lm.r
asbio/R/anm.ls.r
asbio/R/H.mean.R asbio/R/ES.May.R
asbio/R/paik.r
asbio/R/anm.samp.design.R
asbio/R/anm.coin.tck.r
asbio/R/see.unifcdf.r
asbio/R/see.roc.tck.r
asbio/R/see.regression.tck.r
asbio/R/prp.r
asbio/R/perm.fact.test.R asbio/R/pairw.kw.R asbio/R/one.sample.z.R
asbio/R/ci.p.r
asbio/R/Kullback.R
asbio/R/anm.LV.r
asbio/R/see.lmu.tck.r
asbio/R/chi.plot.R asbio/R/selftest.regdiag.R asbio/R/DH.test.R
asbio/R/see.chicdf.r
asbio/R/joint.ci.bonf.R
asbio/R/see.ttest.tck.r
asbio/R/Preston.R
asbio/R/see.lma.tck.r
asbio/R/tukey.add.test.r
asbio/R/anm.ls.tck.r
asbio/R/see.lnormcdf.r
asbio/R/loglik.exp.plot.r
asbio/R/see.ancova.tck.r
asbio/R/ML.k.r
asbio/R/anm.pop.tck.r
asbio/R/see.exppower.r
asbio/R/pseudo.v.R
asbio/R/see.bincdf.r
asbio/R/see.gamcdf.r
asbio/R/AP.test.R
asbio/R/print.prp.index.r
asbio/R/shade.t.tck.r
asbio/R/see.power.r
asbio/R/anm.mc.bvn.r
asbio/R/selftest.ANOVAmixed.R
asbio/R/see.geocdf.r
asbio/R/anm.ci.r
asbio/R/see.mnom.tck.r
asbio/R/see.hypercdf.r
asbio/R/near.bound.r
asbio/R/anm.mc.bvn.tck.r
asbio/R/see.anova.tck.r
asbio/R/anm.die.tck.r
asbio/R/see.normcdf.r
asbio/R/r.pb.r
asbio/R/selftest.conf.r
asbio/R/trim.me.R asbio/R/power.z.test.R asbio/R/huber.NR.R asbio/R/G.mean.R asbio/R/loess.surf.R
asbio/R/g.test.r
asbio/R/anm.ci.tck.r
asbio/R/Venn.R
asbio/R/anm.ls.reg.r
asbio/R/see.tcdf.r
asbio/R/see.weibcdf.r
asbio/R/R.hat.r
asbio/R/anm.samp.design.tck.r
asbio/R/ci.impt.R
asbio/R/anm.ExpDesign.tck.r
asbio/R/selftest.pdfs.r
asbio/R/pairw_oneway.R
asbio/R/shade.bin.tck.r
asbio/R/see.typeI_II.r
asbio/R/see.Fcdf.r
asbio/R/auc.r
asbio/R/samp.dist.tck.r
asbio/R/alpha.div.r
asbio/R/trim.ranef.test.R
asbio/R/bound.angle.r
asbio/R/ci.mu.oneside.R
asbio/R/see.mixedII.r
asbio/R/pairw.anova.R
asbio/R/anm.die.r
asbio/R/anm.ExpDesign.r
asbio/R/anm.LVc.tck.r
asbio/R/Kappa.R
asbio/R/selftest.sampd.r
asbio/R/bv.boxplot.R
asbio/R/Mode.r
asbio/R/partial.resid.plot.r
asbio/R/Bayes.disc.r
asbio/R/see.pdfdriver.r
asbio/R/see.cor.range.tck.r
asbio/R/see.logic.r
asbio/R/ci.prat.r
asbio/R/anm.loglik.r
asbio/R/see.HW.r
asbio/R/see.rEffect.tck.r
asbio/R/mcmc.norm.hier.r
asbio/R/selftest.prob.r
asbio/R/anm.popgrowth.r
asbio/R/anm.ls.reg.tck.r
asbio/R/see.expcdf.r
asbio/R/anm.coin.r
asbio/R/trim.test.R
asbio/R/loglik.norm.plot.r
asbio/R/huber.mu.R
asbio/R/bplot.r
asbio/R/partial.R2.R
asbio/vignettes
asbio/vignettes/ranef.cov.rnw
asbio/vignettes/simpson.rnw
asbio/MD5
asbio/build
asbio/build/vignette.rds
asbio/DESCRIPTION
asbio/man
asbio/man/see.exppower.tck.rd
asbio/man/moose.sel.Rd asbio/man/potash.Rd
asbio/man/larrea.rd
asbio/man/vs.rd
asbio/man/cliff.env.Rd asbio/man/one.sample.z.Rd
asbio/man/death.penalty.rd
asbio/man/starkey.Rd
asbio/man/anm.ls.rd
asbio/man/plantTraits.rd
asbio/man/see.norm.tck.rd
asbio/man/eff.rbd.rd
asbio/man/ML.k.rd
asbio/man/se.jack.rd
asbio/man/see.HW.rd
asbio/man/wash.rich.rd
asbio/man/sedum.ts.Rd
asbio/man/bone.rd
asbio/man/see.ancova.tck.rd
asbio/man/DH.test.rd
asbio/man/grass.rd
asbio/man/fruit.rd
asbio/man/partial.resid.plot.rd
asbio/man/goats.rd
asbio/man/stan.error.Rd
asbio/man/book.menu.rd
asbio/man/ci.p.rd
asbio/man/MS.test.Rd asbio/man/world.co2.Rd
asbio/man/ci.boot.rd
asbio/man/joint.ci.bonf.rd
asbio/man/perm.fact.test.rd
asbio/man/partial.R2.rd
asbio/man/see.lmr.tck.rd
asbio/man/huber.mu.rd
asbio/man/e.cancer.Rd
asbio/man/cliff.sp.rd
asbio/man/see.anova.tck.rd
asbio/man/bv.boxplot.Rd
asbio/man/transM.rd
asbio/man/huber.NR.Rd
asbio/man/lm.select.rd
asbio/man/anm.mc.bvn.rd
asbio/man/see.lma.tck.rd
asbio/man/tukey.add.test.rd
asbio/man/fire.rd
asbio/man/beetle.rd
asbio/man/pairw.oneway.Rd asbio/man/K.Rd asbio/man/H.mean.Rd
asbio/man/skew.kurt.rd
asbio/man/HL.mean.Rd
asbio/man/wheat.rd
asbio/man/see.mnom.tck.rd
asbio/man/trim.ranef.test.rd
asbio/man/alfalfa.split.plot.Rd
asbio/man/anm.geo.growth.rd
asbio/man/press.rd
asbio/man/bvn.plot.rd
asbio/man/km.Rd
asbio/man/wildebeest.rd
asbio/man/see.power.rd
asbio/man/Kappa.rd
asbio/man/see.move.rd
asbio/man/frog.rd
asbio/man/see.smooth.tck.rd
asbio/man/ci.impt.Rd
asbio/man/magnets.rd
asbio/man/see.logic.rd
asbio/man/see.nlm.rd
asbio/man/anm.ExpDesign.rd
asbio/man/plotCI.reg.rd
asbio/man/corn.Rd asbio/man/D.sq.Rd
asbio/man/PCB.rd
asbio/man/crabs.rd
asbio/man/heart.rd
asbio/man/plot.pairw.rd
asbio/man/bayes.lm.rd
asbio/man/dO2.rd
asbio/man/trag.rd
asbio/man/see.roc.tck.rd
asbio/man/illusions.rd
asbio/man/asthma.Rd
asbio/man/potato.rd
asbio/man/enzyme.rd
asbio/man/ConDis.matrix.rd
asbio/man/BDM.test.rd
asbio/man/baby.walk.Rd
asbio/man/fly.sex.rd
asbio/man/anm.die.rd
asbio/man/cuckoo.Rd asbio/man/win.Rd
asbio/man/r.pb.rd
asbio/man/ci.prat.ak.Rd
asbio/man/deer.rd
asbio/man/bombus.rd
asbio/man/prp.rd
asbio/man/garments.rd
asbio/man/anm.ls.reg.rd
asbio/man/G.mean.Rd asbio/man/power.z.test.Rd
asbio/man/rinvchisq.rd
asbio/man/Semiconductor.rd
asbio/man/trim.me.Rd
asbio/man/g.test.rd
asbio/man/Kullback.rd
asbio/man/deer.296.rd
asbio/man/samp.dist.rd
asbio/man/see.accPrec.tck.rd
asbio/man/bootstrap.rd
asbio/man/bromus.rd
asbio/man/see.M.rd
asbio/man/bats.rd
asbio/man/bound.angle.rd
asbio/man/caribou.Rd
asbio/man/anscombe.rd
asbio/man/shade.norm.tck.Rd
asbio/man/mcmc.norm.hier.rd
asbio/man/crab.weight.rd
asbio/man/C.isotope.rd
asbio/man/see.regression.tck.rd
asbio/man/drugs.rd
asbio/man/MC.test.Rd asbio/man/portneuf.Rd asbio/man/exercise.repeated.Rd
asbio/man/selftest.se.tck1.rd
asbio/man/shad.rd
asbio/man/life.exp.Rd
asbio/man/anm.loglik.rd
asbio/man/bplot.rd
asbio/man/ci.sigma.rd
asbio/man/ci.prat.rd
asbio/man/PM2.5.Rd
asbio/man/paik.rd
asbio/man/modlevene.test.Rd asbio/man/see.ttest.tck.Rd
asbio/man/veneer.rd
asbio/man/BCI.count.rd
asbio/man/Venn.rd
asbio/man/ant.dew.rd
asbio/man/anm.ci.rd
asbio/man/pika.rd
asbio/man/MCfunctions.rd
asbio/man/ES.May.rd
asbio/man/AP.test.rd
asbio/man/anm.cont.pdf.rd
asbio/man/see.mixedII.rd
asbio/man/aids.rd
asbio/man/Fbird.rd
asbio/man/chi.plot.Rd
asbio/man/agrostis.rd
asbio/man/sc.twin.rd
asbio/man/BCI.plant.rd
asbio/man/pairw.fried.rd
asbio/man/whickham.rd
asbio/man/see.rEffect.tck.rd
asbio/man/qq.Plot.Rd
asbio/man/so2.us.cities.rd
asbio/man/anolis.rd
asbio/man/montane.island.rd
asbio/man/panel.cor.res.Rd
asbio/man/chronic.rd
asbio/man/R.hat.rd
asbio/man/Mode.rd
asbio/man/huber.one.step.rd
asbio/man/myeloma.rd
asbio/man/Bayes.disc.rd
asbio/man/world.pop.Rd
asbio/man/r.dist.rd
asbio/man/anm.LV.rd
asbio/man/r.bw.rd
asbio/man/pseudo.v.Rd asbio/man/anm.coin.Rd
asbio/man/pairw.kw.rd
asbio/man/snore.Rd asbio/man/rat.Rd asbio/man/shade.norm.Rd
asbio/man/auc.rd
asbio/man/Preston.dist.Rd
asbio/man/boot.ci.M.rd
asbio/man/webs.rd
asbio/man/ci.mu.oneside.rd
asbio/man/depression.rd
asbio/man/bin2dec.rd
asbio/man/SM.temp.moist.Rd asbio/man/SexDeterm.Rd
asbio/man/samp.dist.mech.rd
asbio/man/plotAncova.rd
asbio/man/polyamine.rd
asbio/man/near.bound.rd
asbio/man/alpha.div.Rd
asbio/man/refinery.rd
asbio/man/see.cor.range.tck.rd
asbio/man/see.typeI_II.rd
asbio/man/prostate.rd
asbio/man/anm.samp.design.Rd
asbio/man/ci.strat.rd
asbio/man/ipomopsis.rd
asbio/man/savage.Rd
asbio/man/see.lmu.tck.rd
asbio/man/mosquito.rd
asbio/man/trim.test.rd
asbio/man/pairw.anova.Rd
asbio/man/Glucose2.rd
asbio/man/one.sample.t.rd
asbio/man/bear.Rd asbio/man/simberloff.Rd asbio/man/ci.mu.Rd
asbio/man/loess.surf.rd
asbio/man/ci.median.rd

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All documentation is copyright its authors; we didn't write any of that.