asbio: A Collection of Statistical Tools for Biologists

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Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.

Author
Ken Aho
Date of publication
2016-07-20 03:44:16
Maintainer
Ken Aho <kenaho1@gmail.com>
License
GPL (>= 2)
Version
1.3-4

View on CRAN

Man pages

alfalfa.split.plot
An agricultural split plot design
alpha.div
Functions for calculating alpha diversity.
anm.coin
Animated demonstration of frequentist binomial convergence of...
anm.samp.design
Animated demonstration of randomized sampling designs
asthma
Asthma repeated measures dataset from Littell et al. (2002)
baby.walk
Baby walking times experimental data
bear
Grizzly bear litter sizes
bv.boxplot
Bivariate boxplots
caribou
Caribou count data
chi.plot
Chi plots for diagnosing multivariate independence.
ci.impt
Confidence interval for the product of two proportions
ci.mu
Z and t confidence intervals for mu.
ci.prat.ak
Confidence intervals for ratios of proportions when the...
cliff.env
Environmental data for the community dataset cliff.sp
corn
Corn yield data
cuckoo
Tippett cuckoo egg data
D.sq
Mahalanobis distance for two sites using a pooled covariance...
e.cancer
Esophageal cancer data modified slightly to create a balanced...
exercise.repeated
Repeated measures data for an exercise experiment.
G.mean
Geometric mean
HL.mean
Hodges-Lehman estimator of location
H.mean
Harmonic mean
huber.NR
Huber M-estimator iterative least squares algorithm
K
Soil potassium analyses from 8 laboratories
km
Kaplan-Meier survivorship.
life.exp
Mouse life expectancy data.
MC.test
Monte Carlo hypothesis testing for two samples.
modlevene.test
Modified Levene's test
moose.sel
Datasets for resource use and availability
MS.test
Mack-Skillings test
one.sample.z
One sample z-test
pairw.anova
Conducts pairwise post hoc and planned comparisons associated...
pairw.oneway
Welch tests controlled for simultaneous inference
panel.cor.res
Functions for customizing correlation matrices
PM2.5
PM 2.5 pollutant data from Pocatello Idaho.
portneuf
Portneuf River longitudinal N and P data.
potash
Potash/cotton strength data
power.z.test
Power analysis for a one sample z-test
Preston.dist
Preston diversity analysis
pseudo.v
Jacknife pseudo-values
qq.Plot
Normal quantile plots for single or multiple factor levels
rat
Rat glycogen data from Sokal and Rohlf (2012).
savage
Mammalian BMR and biomass data from Savage et al. (2004)
sedum.ts
CO2 exchange time series data
see.ttest.tck
Visualize t-tests
SexDeterm
Fern environmental sex determination data
shade.norm
Shading functions for interpretation of pdf probabilities.
shade.norm.tck
GUI display of probability
simberloff
Compilations of genus and species counts from Simberloff...
SM.temp.moist
Alpine soil temperature and moisture time series
snore
Snoring and heart disease contingency data
stan.error
Variance and standard error estimators for the sampling...
starkey
DEM data from the Starkey experimental forest in NE Oregon.
trim.me
Trim data
win
Winsorize data
world.co2
World CO2 levels, by country, from 1980 to 2006
world.pop
Population levels in various countries since 1980

Files in this package

asbio
asbio/inst
asbio/inst/pictures
asbio/inst/pictures/goat1.pgm
asbio/inst/pictures/goat3.pgm
asbio/inst/doc
asbio/inst/doc/ranef.cov.pdf
asbio/inst/doc/ranef.cov.rnw
asbio/inst/doc/simpson.R
asbio/inst/doc/simpson.rnw
asbio/inst/doc/simpson.pdf
asbio/inst/doc/ranef.cov.R
asbio/NAMESPACE
asbio/data
asbio/data/sedum.ts.rda
asbio/data/caribou.rda
asbio/data/cliff.sp.rda
asbio/data/cuckoo.rda
asbio/data/ipomopsis.rda
asbio/data/bear.rda
asbio/data/moose.sel.rda
asbio/data/exercise.repeated.rda
asbio/data/webs.rda
asbio/data/starkey.rda
asbio/data/bats.rda
asbio/data/bighornAZ.sel.rda
asbio/data/pika.rda
asbio/data/sc.twin.rda
asbio/data/co2.us.cities.rda
asbio/data/Fbird.rda
asbio/data/bombus.rda
asbio/data/enzyme.rda
asbio/data/dO2.rda
asbio/data/trag.rda
asbio/data/baby.walk.rda
asbio/data/juniper.sel.rda
asbio/data/shad.rda
asbio/data/BCI.plant.rda
asbio/data/Glucose2.rda
asbio/data/vs.rda
asbio/data/bone.rda
asbio/data/portneuf.rda
asbio/data/e.cancer.rda
asbio/data/elk.sel.rda
asbio/data/snore.rda
asbio/data/drugs.rda
asbio/data/anscombe.rda
asbio/data/wheat.rda
asbio/data/montane.island.rda
asbio/data/savage.rda
asbio/data/plantTraits.rda
asbio/data/mosquito.rda
asbio/data/myeloma.rda
asbio/data/SM.temp.moist.rda
asbio/data/grass.rda
asbio/data/so2.us.cities.rda
asbio/data/bighorn.sel.rda
asbio/data/anolis.rda
asbio/data/corn.rda
asbio/data/crabs.rda
asbio/data/asthma.rda
asbio/data/potato.rda
asbio/data/fire.rda
asbio/data/veneer.rda
asbio/data/fruit.rda
asbio/data/C.isotope.rda
asbio/data/deer.rda
asbio/data/PM2.5.rda
asbio/data/garments.rda
asbio/data/PCB.rda
asbio/data/wash.rich.rda
asbio/data/cliff.env.rda
asbio/data/beetle.rda
asbio/data/agrostis.rda
asbio/data/world.co2.rda
asbio/data/magnets.rda
asbio/data/potash.rda
asbio/data/ant.dew.rda
asbio/data/SexDeterm.rda
asbio/data/alfalfa.split.plot.rda
asbio/data/K.rda
asbio/data/polyamine.rda
asbio/data/larrea.rda
asbio/data/aids.rda
asbio/data/whickham.rda
asbio/data/simberloff.rda
asbio/data/chronic.rda
asbio/data/mule.sel.rda
asbio/data/rat.rda
asbio/data/Semiconductor.rda
asbio/data/BCI.count.rda
asbio/data/prostate.rda
asbio/data/heart.rda
asbio/data/crab.weight.rda
asbio/data/world.pop.rda
asbio/data/depression.rda
asbio/data/death.penalty.rda
asbio/data/fly.sex.rda
asbio/data/deer.296.rda
asbio/data/life.exp.rda
asbio/data/goats.rda
asbio/data/refinery.rda
asbio/data/goat.sel.rda
asbio/data/frog.rda
asbio/data/bromus.rda
asbio/data/wildebeest.rda
asbio/data/quail.sel.rda
asbio/R
asbio/R/MS.test.R
asbio/R/shade.poi.tck.r
asbio/R/selftest.stats.tck.R
asbio/R/r.bw.R
asbio/R/samp.dist.mech.r
asbio/R/bootstrap.r
asbio/R/selftest.treatsamp.r
asbio/R/pairw.fried.R
asbio/R/win.R
asbio/R/see.betacdf.r
asbio/R/pairs.panel.functions.R
asbio/R/press.R
asbio/R/one.sample.t.R
asbio/R/selftest.corr.R
asbio/R/see.nbincdf.r
asbio/R/Bayes.disc.tck.r
asbio/R/plotAncova.r
asbio/R/boot.ci.M.R
asbio/R/D.sq.R
asbio/R/selftest.regapproaches.R
asbio/R/shade.F.tck.r
asbio/R/HL.mean.R
asbio/R/bin2dec.r
asbio/R/samp.dist.snap.tck.r
asbio/R/MCfunctions.r
asbio/R/see.poiscdf.r
asbio/R/see.move.r
asbio/R/shade.chi.tck.r
asbio/R/anm.transM.r
asbio/R/see.nlm.r
asbio/R/ci.strat.R
asbio/R/see.logiscdf.r
asbio/R/MC.test.R
asbio/R/selftest.ANOVAsiminf.R
asbio/R/samp.dist.r
asbio/R/BDM.test.R
asbio/R/shade.r
asbio/R/r.dist.r
asbio/R/skew.kurt.r
asbio/R/anm.LVe.tck.r
asbio/R/plotCI.reg.R
asbio/R/rinvchisq.r
asbio/R/see.adddel.r
asbio/R/ci.sigma.r
asbio/R/lm.select.r
asbio/R/modlevene.test.R
asbio/R/bvn.plot.r
asbio/R/see.lmr.tck.r
asbio/R/see.smooth.tck.r
asbio/R/anm.cont.pdf.r
asbio/R/book.menu.r
asbio/R/ci.median.R
asbio/R/stan.error.R
asbio/R/selftest.H0.R
asbio/R/see.accPrec.tck.r
asbio/R/samp.dist.mech.tck.r
asbio/R/print.ci.R
asbio/R/eff.rbd.r
asbio/R/ci.boot.r
asbio/R/qq.Plot.R
asbio/R/ci.prat.ak.R
asbio/R/ci.mu.R
asbio/R/transM.r
asbio/R/ConDis.matrix.R
asbio/R/shade.norm.tck.r
asbio/R/anm.loglik.tck.r
asbio/R/sefltest.typeIISS.R
asbio/R/illusions.r
asbio/R/se.jack.r
asbio/R/anm.TM.tck.r
asbio/R/km.R
asbio/R/huber.one.step.R
asbio/R/see.M.r
asbio/R/bayes.lm.r
asbio/R/anm.ls.r
asbio/R/H.mean.R
asbio/R/ES.May.R
asbio/R/paik.r
asbio/R/anm.samp.design.R
asbio/R/anm.coin.tck.r
asbio/R/see.unifcdf.r
asbio/R/see.roc.tck.r
asbio/R/see.regression.tck.r
asbio/R/prp.r
asbio/R/perm.fact.test.R
asbio/R/pairw.kw.R
asbio/R/one.sample.z.R
asbio/R/ci.p.r
asbio/R/Kullback.R
asbio/R/anm.LV.r
asbio/R/see.lmu.tck.r
asbio/R/chi.plot.R
asbio/R/selftest.regdiag.R
asbio/R/DH.test.R
asbio/R/see.chicdf.r
asbio/R/joint.ci.bonf.R
asbio/R/see.ttest.tck.r
asbio/R/Preston.R
asbio/R/see.lma.tck.r
asbio/R/tukey.add.test.r
asbio/R/anm.ls.tck.r
asbio/R/see.lnormcdf.r
asbio/R/loglik.exp.plot.r
asbio/R/see.ancova.tck.r
asbio/R/ML.k.r
asbio/R/anm.pop.tck.r
asbio/R/see.exppower.r
asbio/R/pseudo.v.R
asbio/R/see.bincdf.r
asbio/R/see.gamcdf.r
asbio/R/AP.test.R
asbio/R/print.prp.index.r
asbio/R/shade.t.tck.r
asbio/R/see.power.r
asbio/R/anm.mc.bvn.r
asbio/R/selftest.ANOVAmixed.R
asbio/R/see.geocdf.r
asbio/R/anm.ci.r
asbio/R/see.mnom.tck.r
asbio/R/see.hypercdf.r
asbio/R/near.bound.r
asbio/R/anm.mc.bvn.tck.r
asbio/R/see.anova.tck.r
asbio/R/anm.die.tck.r
asbio/R/see.normcdf.r
asbio/R/r.pb.r
asbio/R/selftest.conf.r
asbio/R/trim.me.R
asbio/R/power.z.test.R
asbio/R/huber.NR.R
asbio/R/G.mean.R
asbio/R/loess.surf.R
asbio/R/g.test.r
asbio/R/anm.ci.tck.r
asbio/R/Venn.R
asbio/R/anm.ls.reg.r
asbio/R/see.tcdf.r
asbio/R/see.weibcdf.r
asbio/R/R.hat.r
asbio/R/anm.samp.design.tck.r
asbio/R/ci.impt.R
asbio/R/anm.ExpDesign.tck.r
asbio/R/selftest.pdfs.r
asbio/R/pairw_oneway.R
asbio/R/shade.bin.tck.r
asbio/R/see.typeI_II.r
asbio/R/see.Fcdf.r
asbio/R/auc.r
asbio/R/samp.dist.tck.r
asbio/R/alpha.div.r
asbio/R/trim.ranef.test.R
asbio/R/bound.angle.r
asbio/R/ci.mu.oneside.R
asbio/R/see.mixedII.r
asbio/R/pairw.anova.R
asbio/R/anm.die.r
asbio/R/anm.ExpDesign.r
asbio/R/anm.LVc.tck.r
asbio/R/Kappa.R
asbio/R/selftest.sampd.r
asbio/R/bv.boxplot.R
asbio/R/Mode.r
asbio/R/partial.resid.plot.r
asbio/R/Bayes.disc.r
asbio/R/see.pdfdriver.r
asbio/R/see.cor.range.tck.r
asbio/R/see.logic.r
asbio/R/ci.prat.r
asbio/R/anm.loglik.r
asbio/R/see.HW.r
asbio/R/see.rEffect.tck.r
asbio/R/mcmc.norm.hier.r
asbio/R/selftest.prob.r
asbio/R/anm.popgrowth.r
asbio/R/anm.ls.reg.tck.r
asbio/R/see.expcdf.r
asbio/R/anm.coin.r
asbio/R/trim.test.R
asbio/R/loglik.norm.plot.r
asbio/R/huber.mu.R
asbio/R/bplot.r
asbio/R/partial.R2.R
asbio/vignettes
asbio/vignettes/ranef.cov.rnw
asbio/vignettes/simpson.rnw
asbio/MD5
asbio/build
asbio/build/vignette.rds
asbio/DESCRIPTION
asbio/man
asbio/man/see.exppower.tck.rd
asbio/man/moose.sel.Rd
asbio/man/potash.Rd
asbio/man/larrea.rd
asbio/man/vs.rd
asbio/man/cliff.env.Rd
asbio/man/one.sample.z.Rd
asbio/man/death.penalty.rd
asbio/man/starkey.Rd
asbio/man/anm.ls.rd
asbio/man/plantTraits.rd
asbio/man/see.norm.tck.rd
asbio/man/eff.rbd.rd
asbio/man/ML.k.rd
asbio/man/se.jack.rd
asbio/man/see.HW.rd
asbio/man/wash.rich.rd
asbio/man/sedum.ts.Rd
asbio/man/bone.rd
asbio/man/see.ancova.tck.rd
asbio/man/DH.test.rd
asbio/man/grass.rd
asbio/man/fruit.rd
asbio/man/partial.resid.plot.rd
asbio/man/goats.rd
asbio/man/stan.error.Rd
asbio/man/book.menu.rd
asbio/man/ci.p.rd
asbio/man/MS.test.Rd
asbio/man/world.co2.Rd
asbio/man/ci.boot.rd
asbio/man/joint.ci.bonf.rd
asbio/man/perm.fact.test.rd
asbio/man/partial.R2.rd
asbio/man/see.lmr.tck.rd
asbio/man/huber.mu.rd
asbio/man/e.cancer.Rd
asbio/man/cliff.sp.rd
asbio/man/see.anova.tck.rd
asbio/man/bv.boxplot.Rd
asbio/man/transM.rd
asbio/man/huber.NR.Rd
asbio/man/lm.select.rd
asbio/man/anm.mc.bvn.rd
asbio/man/see.lma.tck.rd
asbio/man/tukey.add.test.rd
asbio/man/fire.rd
asbio/man/beetle.rd
asbio/man/pairw.oneway.Rd
asbio/man/K.Rd
asbio/man/H.mean.Rd
asbio/man/skew.kurt.rd
asbio/man/HL.mean.Rd
asbio/man/wheat.rd
asbio/man/see.mnom.tck.rd
asbio/man/trim.ranef.test.rd
asbio/man/alfalfa.split.plot.Rd
asbio/man/anm.geo.growth.rd
asbio/man/press.rd
asbio/man/bvn.plot.rd
asbio/man/km.Rd
asbio/man/wildebeest.rd
asbio/man/see.power.rd
asbio/man/Kappa.rd
asbio/man/see.move.rd
asbio/man/frog.rd
asbio/man/see.smooth.tck.rd
asbio/man/ci.impt.Rd
asbio/man/magnets.rd
asbio/man/see.logic.rd
asbio/man/see.nlm.rd
asbio/man/anm.ExpDesign.rd
asbio/man/plotCI.reg.rd
asbio/man/corn.Rd
asbio/man/D.sq.Rd
asbio/man/PCB.rd
asbio/man/crabs.rd
asbio/man/heart.rd
asbio/man/plot.pairw.rd
asbio/man/bayes.lm.rd
asbio/man/dO2.rd
asbio/man/trag.rd
asbio/man/see.roc.tck.rd
asbio/man/illusions.rd
asbio/man/asthma.Rd
asbio/man/potato.rd
asbio/man/enzyme.rd
asbio/man/ConDis.matrix.rd
asbio/man/BDM.test.rd
asbio/man/baby.walk.Rd
asbio/man/fly.sex.rd
asbio/man/anm.die.rd
asbio/man/cuckoo.Rd
asbio/man/win.Rd
asbio/man/r.pb.rd
asbio/man/ci.prat.ak.Rd
asbio/man/deer.rd
asbio/man/bombus.rd
asbio/man/prp.rd
asbio/man/garments.rd
asbio/man/anm.ls.reg.rd
asbio/man/G.mean.Rd
asbio/man/power.z.test.Rd
asbio/man/rinvchisq.rd
asbio/man/Semiconductor.rd
asbio/man/trim.me.Rd
asbio/man/g.test.rd
asbio/man/Kullback.rd
asbio/man/deer.296.rd
asbio/man/samp.dist.rd
asbio/man/see.accPrec.tck.rd
asbio/man/bootstrap.rd
asbio/man/bromus.rd
asbio/man/see.M.rd
asbio/man/bats.rd
asbio/man/bound.angle.rd
asbio/man/caribou.Rd
asbio/man/anscombe.rd
asbio/man/shade.norm.tck.Rd
asbio/man/mcmc.norm.hier.rd
asbio/man/crab.weight.rd
asbio/man/C.isotope.rd
asbio/man/see.regression.tck.rd
asbio/man/drugs.rd
asbio/man/MC.test.Rd
asbio/man/portneuf.Rd
asbio/man/exercise.repeated.Rd
asbio/man/selftest.se.tck1.rd
asbio/man/shad.rd
asbio/man/life.exp.Rd
asbio/man/anm.loglik.rd
asbio/man/bplot.rd
asbio/man/ci.sigma.rd
asbio/man/ci.prat.rd
asbio/man/PM2.5.Rd
asbio/man/paik.rd
asbio/man/modlevene.test.Rd
asbio/man/see.ttest.tck.Rd
asbio/man/veneer.rd
asbio/man/BCI.count.rd
asbio/man/Venn.rd
asbio/man/ant.dew.rd
asbio/man/anm.ci.rd
asbio/man/pika.rd
asbio/man/MCfunctions.rd
asbio/man/ES.May.rd
asbio/man/AP.test.rd
asbio/man/anm.cont.pdf.rd
asbio/man/see.mixedII.rd
asbio/man/aids.rd
asbio/man/Fbird.rd
asbio/man/chi.plot.Rd
asbio/man/agrostis.rd
asbio/man/sc.twin.rd
asbio/man/BCI.plant.rd
asbio/man/pairw.fried.rd
asbio/man/whickham.rd
asbio/man/see.rEffect.tck.rd
asbio/man/qq.Plot.Rd
asbio/man/so2.us.cities.rd
asbio/man/anolis.rd
asbio/man/montane.island.rd
asbio/man/panel.cor.res.Rd
asbio/man/chronic.rd
asbio/man/R.hat.rd
asbio/man/Mode.rd
asbio/man/huber.one.step.rd
asbio/man/myeloma.rd
asbio/man/Bayes.disc.rd
asbio/man/world.pop.Rd
asbio/man/r.dist.rd
asbio/man/anm.LV.rd
asbio/man/r.bw.rd
asbio/man/pseudo.v.Rd
asbio/man/anm.coin.Rd
asbio/man/pairw.kw.rd
asbio/man/snore.Rd
asbio/man/rat.Rd
asbio/man/shade.norm.Rd
asbio/man/auc.rd
asbio/man/Preston.dist.Rd
asbio/man/boot.ci.M.rd
asbio/man/webs.rd
asbio/man/ci.mu.oneside.rd
asbio/man/depression.rd
asbio/man/bin2dec.rd
asbio/man/SM.temp.moist.Rd
asbio/man/SexDeterm.Rd
asbio/man/samp.dist.mech.rd
asbio/man/plotAncova.rd
asbio/man/polyamine.rd
asbio/man/near.bound.rd
asbio/man/alpha.div.Rd
asbio/man/refinery.rd
asbio/man/see.cor.range.tck.rd
asbio/man/see.typeI_II.rd
asbio/man/prostate.rd
asbio/man/anm.samp.design.Rd
asbio/man/ci.strat.rd
asbio/man/ipomopsis.rd
asbio/man/savage.Rd
asbio/man/see.lmu.tck.rd
asbio/man/mosquito.rd
asbio/man/trim.test.rd
asbio/man/pairw.anova.Rd
asbio/man/Glucose2.rd
asbio/man/one.sample.t.rd
asbio/man/bear.Rd
asbio/man/simberloff.Rd
asbio/man/ci.mu.Rd
asbio/man/loess.surf.rd
asbio/man/ci.median.rd