asbio: A Collection of Statistical Tools for Biologists

Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.

Install the latest version of this package by entering the following in R:
install.packages("asbio")
AuthorKen Aho
Date of publication2016-07-20 03:44:16
MaintainerKen Aho <kenaho1@gmail.com>
LicenseGPL (>= 2)
Version1.3-4

View on CRAN

Man pages

alfalfa.split.plot: An agricultural split plot design

alpha.div: Functions for calculating alpha diversity.

anm.coin: Animated demonstration of frequentist binomial convergence of...

anm.samp.design: Animated demonstration of randomized sampling designs

asthma: Asthma repeated measures dataset from Littell et al. (2002)

baby.walk: Baby walking times experimental data

bear: Grizzly bear litter sizes

bv.boxplot: Bivariate boxplots

caribou: Caribou count data

chi.plot: Chi plots for diagnosing multivariate independence.

ci.impt: Confidence interval for the product of two proportions

ci.mu: Z and t confidence intervals for mu.

ci.prat.ak: Confidence intervals for ratios of proportions when the...

cliff.env: Environmental data for the community dataset cliff.sp

corn: Corn yield data

cuckoo: Tippett cuckoo egg data

D.sq: Mahalanobis distance for two sites using a pooled covariance...

e.cancer: Esophageal cancer data modified slightly to create a balanced...

exercise.repeated: Repeated measures data for an exercise experiment.

G.mean: Geometric mean

HL.mean: Hodges-Lehman estimator of location

H.mean: Harmonic mean

huber.NR: Huber M-estimator iterative least squares algorithm

K: Soil potassium analyses from 8 laboratories

km: Kaplan-Meier survivorship.

life.exp: Mouse life expectancy data.

MC.test: Monte Carlo hypothesis testing for two samples.

modlevene.test: Modified Levene's test

moose.sel: Datasets for resource use and availability

MS.test: Mack-Skillings test

one.sample.z: One sample z-test

pairw.anova: Conducts pairwise post hoc and planned comparisons associated...

pairw.oneway: Welch tests controlled for simultaneous inference

panel.cor.res: Functions for customizing correlation matrices

PM2.5: PM 2.5 pollutant data from Pocatello Idaho.

portneuf: Portneuf River longitudinal N and P data.

potash: Potash/cotton strength data

power.z.test: Power analysis for a one sample z-test

Preston.dist: Preston diversity analysis

pseudo.v: Jacknife pseudo-values

qq.Plot: Normal quantile plots for single or multiple factor levels

rat: Rat glycogen data from Sokal and Rohlf (2012).

savage: Mammalian BMR and biomass data from Savage et al. (2004)

sedum.ts: CO2 exchange time series data

see.ttest.tck: Visualize t-tests

SexDeterm: Fern environmental sex determination data

shade.norm: Shading functions for interpretation of pdf probabilities.

shade.norm.tck: GUI display of probability

simberloff: Compilations of genus and species counts from Simberloff...

SM.temp.moist: Alpine soil temperature and moisture time series

snore: Snoring and heart disease contingency data

stan.error: Variance and standard error estimators for the sampling...

starkey: DEM data from the Starkey experimental forest in NE Oregon.

trim.me: Trim data

win: Winsorize data

world.co2: World CO2 levels, by country, from 1980 to 2006

world.pop: Population levels in various countries since 1980

Functions

alfalfa.split.plot Man page
alpha.div Man page
anm.coin Man page
anm.coin.tck Man page
anm.samp.design Man page
anm.samp.design.tck Man page
asthma Man page
baby.walk Man page
bear Man page
bighornAZ.sel Man page
bighorn.sel Man page
bonfCI Man page
bonf.cont Man page
bv.boxplot Man page
caribou Man page
chi.plot Man page
ci.impt Man page
ci.mu.t Man page
ci.mu.z Man page
ci.prat.ak Man page
cliff.env Man page
corn Man page
cuckoo Man page
D.sq Man page
dunnettCI Man page
e.cancer Man page
elk.sel Man page
exercise.repeated Man page
G.mean Man page
goat.sel Man page
HL.mean Man page
H.mean Man page
huber.NR Man page
juniper.sel Man page
K Man page
km Man page
life.exp Man page
lsdCI Man page
MC.test Man page
modlevene.test Man page
moose.sel Man page
MS.test Man page
mule.sel Man page
one.sample.z Man page
pairw.anova Man page
pairw.oneway Man page
panel.cor.res Man page
panel.lm Man page
PM2.5 Man page
portneuf Man page
potash Man page
power.z.test Man page
Preston.dist Man page
print.ci Man page
print.mltest Man page
print.oneSamp Man page
print.pairw Man page
pseudo.v Man page
qq.Plot Man page
quail.sel Man page
rat Man page
samp.design Man page
savage Man page
scheffeCI Man page
scheffe.cont Man page
sedum.ts Man page
see.ttest.tck Man page
SexDeterm Man page
shade Man page
shade.bin Man page
shade.bin.tck Man page
shade.chi Man page
shade.chi.tck Man page
shade.F Man page
shade.F.tck Man page
shade.norm Man page
shade.norm.tck Man page
shade.poi Man page
shade.poi.tck Man page
shade.t Man page
shade.t.tck Man page
shade.wei Man page
simberloff Man page
Simp.index Man page
SM.temp.moist Man page
snore Man page
stan.error Man page
stan.error.sq Man page
starkey Man page
SW.index Man page
trim.me Man page
tukeyCI Man page
win Man page
world.co2 Man page
world.pop Man page

Files

inst
inst/pictures
inst/pictures/goat1.pgm
inst/pictures/goat3.pgm
inst/doc
inst/doc/ranef.cov.pdf
inst/doc/ranef.cov.rnw
inst/doc/simpson.R
inst/doc/simpson.rnw
inst/doc/simpson.pdf
inst/doc/ranef.cov.R
NAMESPACE
data
data/sedum.ts.rda
data/caribou.rda
data/cliff.sp.rda
data/cuckoo.rda
data/ipomopsis.rda
data/bear.rda
data/moose.sel.rda
data/exercise.repeated.rda
data/webs.rda
data/starkey.rda
data/bats.rda
data/bighornAZ.sel.rda
data/pika.rda
data/sc.twin.rda
data/co2.us.cities.rda
data/Fbird.rda
data/bombus.rda
data/enzyme.rda
data/dO2.rda
data/trag.rda
data/baby.walk.rda
data/juniper.sel.rda
data/shad.rda
data/BCI.plant.rda
data/Glucose2.rda
data/vs.rda
data/bone.rda
data/portneuf.rda
data/e.cancer.rda
data/elk.sel.rda
data/snore.rda
data/drugs.rda
data/anscombe.rda
data/wheat.rda
data/montane.island.rda
data/savage.rda
data/plantTraits.rda
data/mosquito.rda
data/myeloma.rda
data/SM.temp.moist.rda
data/grass.rda
data/so2.us.cities.rda
data/bighorn.sel.rda
data/anolis.rda
data/corn.rda
data/crabs.rda
data/asthma.rda
data/potato.rda
data/fire.rda
data/veneer.rda
data/fruit.rda
data/C.isotope.rda
data/deer.rda
data/PM2.5.rda
data/garments.rda
data/PCB.rda
data/wash.rich.rda
data/cliff.env.rda
data/beetle.rda
data/agrostis.rda
data/world.co2.rda
data/magnets.rda
data/potash.rda
data/ant.dew.rda
data/SexDeterm.rda
data/alfalfa.split.plot.rda
data/K.rda
data/polyamine.rda
data/larrea.rda
data/aids.rda
data/whickham.rda
data/simberloff.rda
data/chronic.rda
data/mule.sel.rda
data/rat.rda
data/Semiconductor.rda
data/BCI.count.rda
data/prostate.rda
data/heart.rda
data/crab.weight.rda
data/world.pop.rda
data/depression.rda
data/death.penalty.rda
data/fly.sex.rda
data/deer.296.rda
data/life.exp.rda
data/goats.rda
data/refinery.rda
data/goat.sel.rda
data/frog.rda
data/bromus.rda
data/wildebeest.rda
data/quail.sel.rda
R
R/MS.test.R R/shade.poi.tck.r R/selftest.stats.tck.R R/r.bw.R R/samp.dist.mech.r R/bootstrap.r R/selftest.treatsamp.r R/pairw.fried.R R/win.R R/see.betacdf.r R/pairs.panel.functions.R R/press.R R/one.sample.t.R R/selftest.corr.R R/see.nbincdf.r R/Bayes.disc.tck.r R/plotAncova.r R/boot.ci.M.R R/D.sq.R R/selftest.regapproaches.R R/shade.F.tck.r R/HL.mean.R R/bin2dec.r R/samp.dist.snap.tck.r R/MCfunctions.r R/see.poiscdf.r R/see.move.r R/shade.chi.tck.r R/anm.transM.r R/see.nlm.r R/ci.strat.R R/see.logiscdf.r R/MC.test.R R/selftest.ANOVAsiminf.R R/samp.dist.r R/BDM.test.R R/shade.r R/r.dist.r R/skew.kurt.r R/anm.LVe.tck.r R/plotCI.reg.R R/rinvchisq.r R/see.adddel.r R/ci.sigma.r R/lm.select.r R/modlevene.test.R R/bvn.plot.r R/see.lmr.tck.r R/see.smooth.tck.r R/anm.cont.pdf.r R/book.menu.r R/ci.median.R R/stan.error.R R/selftest.H0.R R/see.accPrec.tck.r R/samp.dist.mech.tck.r R/print.ci.R R/eff.rbd.r R/ci.boot.r R/qq.Plot.R R/ci.prat.ak.R R/ci.mu.R R/transM.r R/ConDis.matrix.R R/shade.norm.tck.r R/anm.loglik.tck.r R/sefltest.typeIISS.R R/illusions.r R/se.jack.r R/anm.TM.tck.r R/km.R R/huber.one.step.R R/see.M.r R/bayes.lm.r R/anm.ls.r R/H.mean.R R/ES.May.R R/paik.r R/anm.samp.design.R R/anm.coin.tck.r R/see.unifcdf.r R/see.roc.tck.r R/see.regression.tck.r R/prp.r R/perm.fact.test.R R/pairw.kw.R R/one.sample.z.R R/ci.p.r R/Kullback.R R/anm.LV.r R/see.lmu.tck.r R/chi.plot.R R/selftest.regdiag.R R/DH.test.R R/see.chicdf.r R/joint.ci.bonf.R R/see.ttest.tck.r R/Preston.R R/see.lma.tck.r R/tukey.add.test.r R/anm.ls.tck.r R/see.lnormcdf.r R/loglik.exp.plot.r R/see.ancova.tck.r R/ML.k.r R/anm.pop.tck.r R/see.exppower.r R/pseudo.v.R R/see.bincdf.r R/see.gamcdf.r R/AP.test.R R/print.prp.index.r R/shade.t.tck.r R/see.power.r R/anm.mc.bvn.r R/selftest.ANOVAmixed.R R/see.geocdf.r R/anm.ci.r R/see.mnom.tck.r R/see.hypercdf.r R/near.bound.r R/anm.mc.bvn.tck.r R/see.anova.tck.r R/anm.die.tck.r R/see.normcdf.r R/r.pb.r R/selftest.conf.r R/trim.me.R R/power.z.test.R R/huber.NR.R R/G.mean.R R/loess.surf.R R/g.test.r R/anm.ci.tck.r R/Venn.R R/anm.ls.reg.r R/see.tcdf.r R/see.weibcdf.r R/R.hat.r R/anm.samp.design.tck.r R/ci.impt.R R/anm.ExpDesign.tck.r R/selftest.pdfs.r R/pairw_oneway.R R/shade.bin.tck.r R/see.typeI_II.r R/see.Fcdf.r R/auc.r R/samp.dist.tck.r R/alpha.div.r R/trim.ranef.test.R R/bound.angle.r R/ci.mu.oneside.R R/see.mixedII.r R/pairw.anova.R R/anm.die.r R/anm.ExpDesign.r R/anm.LVc.tck.r R/Kappa.R R/selftest.sampd.r R/bv.boxplot.R R/Mode.r R/partial.resid.plot.r R/Bayes.disc.r R/see.pdfdriver.r R/see.cor.range.tck.r R/see.logic.r R/ci.prat.r R/anm.loglik.r R/see.HW.r R/see.rEffect.tck.r R/mcmc.norm.hier.r R/selftest.prob.r R/anm.popgrowth.r R/anm.ls.reg.tck.r R/see.expcdf.r R/anm.coin.r R/trim.test.R R/loglik.norm.plot.r R/huber.mu.R R/bplot.r R/partial.R2.R
vignettes
vignettes/ranef.cov.rnw
vignettes/simpson.rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/see.exppower.tck.rd
man/moose.sel.Rd man/potash.Rd
man/larrea.rd
man/vs.rd
man/cliff.env.Rd man/one.sample.z.Rd
man/death.penalty.rd
man/starkey.Rd
man/anm.ls.rd
man/plantTraits.rd
man/see.norm.tck.rd
man/eff.rbd.rd
man/ML.k.rd
man/se.jack.rd
man/see.HW.rd
man/wash.rich.rd
man/sedum.ts.Rd
man/bone.rd
man/see.ancova.tck.rd
man/DH.test.rd
man/grass.rd
man/fruit.rd
man/partial.resid.plot.rd
man/goats.rd
man/stan.error.Rd
man/book.menu.rd
man/ci.p.rd
man/MS.test.Rd man/world.co2.Rd
man/ci.boot.rd
man/joint.ci.bonf.rd
man/perm.fact.test.rd
man/partial.R2.rd
man/see.lmr.tck.rd
man/huber.mu.rd
man/e.cancer.Rd
man/cliff.sp.rd
man/see.anova.tck.rd
man/bv.boxplot.Rd
man/transM.rd
man/huber.NR.Rd
man/lm.select.rd
man/anm.mc.bvn.rd
man/see.lma.tck.rd
man/tukey.add.test.rd
man/fire.rd
man/beetle.rd
man/pairw.oneway.Rd man/K.Rd man/H.mean.Rd
man/skew.kurt.rd
man/HL.mean.Rd
man/wheat.rd
man/see.mnom.tck.rd
man/trim.ranef.test.rd
man/alfalfa.split.plot.Rd
man/anm.geo.growth.rd
man/press.rd
man/bvn.plot.rd
man/km.Rd
man/wildebeest.rd
man/see.power.rd
man/Kappa.rd
man/see.move.rd
man/frog.rd
man/see.smooth.tck.rd
man/ci.impt.Rd
man/magnets.rd
man/see.logic.rd
man/see.nlm.rd
man/anm.ExpDesign.rd
man/plotCI.reg.rd
man/corn.Rd man/D.sq.Rd
man/PCB.rd
man/crabs.rd
man/heart.rd
man/plot.pairw.rd
man/bayes.lm.rd
man/dO2.rd
man/trag.rd
man/see.roc.tck.rd
man/illusions.rd
man/asthma.Rd
man/potato.rd
man/enzyme.rd
man/ConDis.matrix.rd
man/BDM.test.rd
man/baby.walk.Rd
man/fly.sex.rd
man/anm.die.rd
man/cuckoo.Rd man/win.Rd
man/r.pb.rd
man/ci.prat.ak.Rd
man/deer.rd
man/bombus.rd
man/prp.rd
man/garments.rd
man/anm.ls.reg.rd
man/G.mean.Rd man/power.z.test.Rd
man/rinvchisq.rd
man/Semiconductor.rd
man/trim.me.Rd
man/g.test.rd
man/Kullback.rd
man/deer.296.rd
man/samp.dist.rd
man/see.accPrec.tck.rd
man/bootstrap.rd
man/bromus.rd
man/see.M.rd
man/bats.rd
man/bound.angle.rd
man/caribou.Rd
man/anscombe.rd
man/shade.norm.tck.Rd
man/mcmc.norm.hier.rd
man/crab.weight.rd
man/C.isotope.rd
man/see.regression.tck.rd
man/drugs.rd
man/MC.test.Rd man/portneuf.Rd man/exercise.repeated.Rd
man/selftest.se.tck1.rd
man/shad.rd
man/life.exp.Rd
man/anm.loglik.rd
man/bplot.rd
man/ci.sigma.rd
man/ci.prat.rd
man/PM2.5.Rd
man/paik.rd
man/modlevene.test.Rd man/see.ttest.tck.Rd
man/veneer.rd
man/BCI.count.rd
man/Venn.rd
man/ant.dew.rd
man/anm.ci.rd
man/pika.rd
man/MCfunctions.rd
man/ES.May.rd
man/AP.test.rd
man/anm.cont.pdf.rd
man/see.mixedII.rd
man/aids.rd
man/Fbird.rd
man/chi.plot.Rd
man/agrostis.rd
man/sc.twin.rd
man/BCI.plant.rd
man/pairw.fried.rd
man/whickham.rd
man/see.rEffect.tck.rd
man/qq.Plot.Rd
man/so2.us.cities.rd
man/anolis.rd
man/montane.island.rd
man/panel.cor.res.Rd
man/chronic.rd
man/R.hat.rd
man/Mode.rd
man/huber.one.step.rd
man/myeloma.rd
man/Bayes.disc.rd
man/world.pop.Rd
man/r.dist.rd
man/anm.LV.rd
man/r.bw.rd
man/pseudo.v.Rd man/anm.coin.Rd
man/pairw.kw.rd
man/snore.Rd man/rat.Rd man/shade.norm.Rd
man/auc.rd
man/Preston.dist.Rd
man/boot.ci.M.rd
man/webs.rd
man/ci.mu.oneside.rd
man/depression.rd
man/bin2dec.rd
man/SM.temp.moist.Rd man/SexDeterm.Rd
man/samp.dist.mech.rd
man/plotAncova.rd
man/polyamine.rd
man/near.bound.rd
man/alpha.div.Rd
man/refinery.rd
man/see.cor.range.tck.rd
man/see.typeI_II.rd
man/prostate.rd
man/anm.samp.design.Rd
man/ci.strat.rd
man/ipomopsis.rd
man/savage.Rd
man/see.lmu.tck.rd
man/mosquito.rd
man/trim.test.rd
man/pairw.anova.Rd
man/Glucose2.rd
man/one.sample.t.rd
man/bear.Rd man/simberloff.Rd man/ci.mu.Rd
man/loess.surf.rd
man/ci.median.rd

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