plot_diagnostic: Diagnostic plots for ash object
In ashr: Methods for Adaptive Shrinkage, using Empirical Bayes

plot_diagnostic

R Documentation

Diagnostic plots for ash object

Description

Generate several plots to diagnose the fitness of ASH on the data

Usage

plot_diagnostic(
  x,
  plot.it = TRUE,
  sebetahat.tol = 0.001,
  plot.hist,
  xmin,
  xmax,
  breaks = "Sturges",
  alpha = 0.01,
  pch = 19,
  cex = 0.25
)

Arguments

`x`	the fitted ash object
`plot.it`	logical. whether to plot the diagnostic result
`sebetahat.tol`	tolerance to test the equality of betahat
`plot.hist`	logical. whether to plot the histogram of betahat when sebetahat is not constant
`xmin, xmax`	range of the histogram of betahat to be plotted
`breaks`	histograms parameter (see `hist`)
`alpha`	error level for the de-trended diagnostic plot
`pch, cex`	plot parameters for dots