asnipe: Animal Social Network Inference and Permutations for Ecologists
Version 1.1.3

Implements several tools that are used in animal social network analysis. In particular, this package provides the tools to infer groups and generate networks from observation data, perform permutation tests on the data, calculate lagged association rates, and performed multiple regression analysis on social network data.

AuthorDamien R. Farine <dfarine@orn.mpg.de>
Date of publication2017-02-21 15:17:06
MaintainerDamien R. Farine <dfarine@orn.mpg.de>
LicenseGPL-2
Version1.1.3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("asnipe")

Getting started

Package overview

Popular man pages

asnipe-package: Animal Social Network inference and Permutation: asnipe
gbi: Detections of Individuals Forming Flocks at Bird Feeders
get_network: Calculating Weighted Network
inds: Data on the Individual Birds Contained in the Group by...
LAR: Mean Lagged Association Rate
LRA: Dyadic Lagged Association Rate
mrqap.custom.null: MRQAP function with custom permutation networks
See all...

All man pages Function index File listing

Man pages

asnipe-package: Animal Social Network inference and Permutation: asnipe
gbi: Detections of Individuals Forming Flocks at Bird Feeders
get_associations_points_tw: Calculate Group Membership using Time Window
get_group_by_individual: Convert group or individual data into a group by individual...
get_network: Calculating Weighted Network
get_sampling_periods: Convert group or individual data into sampling periods
gmmevents: Infer gathering events
identified_individuals: Raw Observation Data of Individual Birds Feeding at Flocks
inds: Data on the Individual Birds Contained in the Group by...
LAR: Mean Lagged Association Rate
LRA: Dyadic Lagged Association Rate
mrqap.custom.null: MRQAP function with custom permutation networks
mrqap.dsp: MRQAP with Double-Semi-Partialing (DSP)
network_permutation: Perform Permutation
network_swap: Perform one (or more) random swap
print.mrqap.dsp: Print function for mrqap.dsp
times: Observation Time for each Flock Contained in the Group by...

Functions

LAR Man page Source code
LRA Man page Source code
asnipe Man page
asnipe-package Man page
build_B_from_Y Source code
dirichlet_kl Source code
estep Source code
freeener Source code
gauss_kl Source code
gbi Man page
get_T_matrix Source code
get_associations_points_tw Man page Source code
get_coocurences_in_bipartite_graph Source code
get_group_by_individual Man page Source code
get_hard_incidence_matrix Source code
get_network Man page Source code
get_sampling_periods Man page Source code
gmmevents Man page Source code
gmmvar Source code
gmmvarinit Source code
identified_individuals Man page
inds Man page
infer_graph_from_datastream_mmVB Source code
mdist Source code
mlmatrix Source code
mrqap.custom.null Man page Source code
mrqap.dsp Man page Source code
mstep Source code
network_permutation Man page Source code
network_swap Man page Source code
node_permutation Source code
print.mrqap.dsp Man page Source code
sampgauss Source code
test_network_hypothesis Source code
times Man page
wishart_kl Source code
wishartrnd Source code

Files

NAMESPACE
data
data/times.RData
data/identified_individuals.RData
data/group_by_individual.RData
data/individuals.RData
R
R/print.mrqap.dsp.R
R/get_gbi.R
R/node_permutation.R
R/LRA.R
R/undefined.R
R/test_network_hypothesis.R
R/LAR.R
R/gmmevents.R
R/get_sampling_periods.R
R/get_associations_points_tw.R
R/network_swap.R
R/network_permutation.R
R/mrqap.dsp.R
R/mrqap.custom.null.R
R/get_network.R
MD5
DESCRIPTION
man
man/network_permutation.Rd
man/get_network.Rd
man/times.Rd
man/asnipe-package.Rd
man/get_group_by_individual.Rd
man/LRA.Rd
man/print.mrqap.dsp.Rd
man/identified_individuals.Rd
man/gmmevents.Rd
man/mrqap.dsp.Rd
man/mrqap.custom.null.Rd
man/get_associations_points_tw.Rd
man/gbi.Rd
man/network_swap.Rd
man/LAR.Rd
man/inds.Rd
man/get_sampling_periods.Rd
asnipe documentation built on May 19, 2017, 8:18 p.m.

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