asnipe: Animal Social Network Inference and Permutations for Ecologists

Implements several tools that are used in animal social network analysis. In particular, this package provides the tools to infer groups and generate networks from observation data, perform permutation tests on the data, calculate lagged association rates, and performed multiple regression analysis on social network data.

Author
Damien R. Farine <dfarine@orn.mpg.de>
Date of publication
2016-11-28 13:06:57
Maintainer
Damien R. Farine <dfarine@orn.mpg.de>
License
GPL-2
Version
1.1

View on CRAN

Man pages

asnipe-package
Animal Social Network inference and Permutation: asnipe
gbi
Detections of Individuals Forming Flocks at Bird Feeders
get_associations_points_tw
Calculate Group Membership using Time Window
get_group_by_individual
Convert group or individual data into a group by individual...
get_network
Calculating Weighted Network
get_sampling_periods
Convert group or individual data into sampling periods
gmmevents
Infer gathering events
identified_individuals
Raw Observation Data of Individual Birds Feeding at Flocks
inds
Data on the Individual Birds Contained in the Group by...
LAR
Mean Lagged Association Rate
LRA
Dyadic Lagged Association Rate
mrqap.custom.null
MRQAP function with custom permutation networks
mrqap.dsp
MRQAP with Double-Semi-Partialing (DSP)
network_permutation
Perform Permutation
network_swap
Perform one (or more) random swap
print.mrqap.dsp
Print function for mrqap.dsp
times
Observation Time for each Flock Contained in the Group by...

Files in this package

asnipe
asnipe/NAMESPACE
asnipe/data
asnipe/data/times.RData
asnipe/data/identified_individuals.RData
asnipe/data/group_by_individual.RData
asnipe/data/individuals.RData
asnipe/R
asnipe/R/print.mrqap.dsp.R
asnipe/R/get_gbi.R
asnipe/R/LRA.R
asnipe/R/undefined.R
asnipe/R/LAR.R
asnipe/R/gmmevents.R
asnipe/R/get_sampling_periods.R
asnipe/R/get_associations_points_tw.R
asnipe/R/network_swap.R
asnipe/R/network_permutation.R
asnipe/R/mrqap.dsp.R
asnipe/R/mrqap.custom.null.R
asnipe/R/get_network.R
asnipe/MD5
asnipe/DESCRIPTION
asnipe/man
asnipe/man/network_permutation.Rd
asnipe/man/get_network.Rd
asnipe/man/times.Rd
asnipe/man/asnipe-package.Rd
asnipe/man/get_group_by_individual.Rd
asnipe/man/LRA.Rd
asnipe/man/print.mrqap.dsp.Rd
asnipe/man/identified_individuals.Rd
asnipe/man/gmmevents.Rd
asnipe/man/mrqap.dsp.Rd
asnipe/man/mrqap.custom.null.Rd
asnipe/man/get_associations_points_tw.Rd
asnipe/man/gbi.Rd
asnipe/man/network_swap.Rd
asnipe/man/LAR.Rd
asnipe/man/inds.Rd
asnipe/man/get_sampling_periods.Rd