atlas.dump: Dumps patient from ATLAS to a file on disk

In atlas: Stanford 'ATLAS' Search Engine API

Description

Dumps patient from ATLAS to a file on disk

Usage

atlas.dump(connection, patient_id, path, selection_query = NULL,
  contains_start = FALSE, contains_end = FALSE)

Arguments

connection	connection object returned from connect(url) function
patient_id	numerical id of the patient
path	path where to store the generated files
selection_query	returns only the part of patient's data that intersects with the result of the selection_query
contains_start	the dumped time interval's start has to be intersecting the selection_query
contains_end	the dumped time interval's end has to be intersecting the selection_query

Value

data frame containing patient IDs and time intervals (optional)

Examples

atlas.dump(atlas.connect('http://localhost:8080'), 123, '/path/to/dump/files/')
atlas.dump(atlas.connect('http://localhost:8080'), 123, '/path/', 'ICD9=250.50', TRUE, TRUE)

atlas documentation built on May 2, 2019, 5:07 a.m.