atlas.query: Queries ATLAS and returns a list of patient IDs

In atlas: Stanford 'ATLAS' Search Engine API

Description

Queries ATLAS and returns a list of patient IDs

Usage

atlas.query(connection, query, output_time = FALSE)

Arguments

connection	connection object returned from connect(url) function
query	ATLAS query
output_time	equivalent to wrapping the query in OUTPUT() command. Togerther with patient IDs outputs each time interval in patient's timeline when the query was evaluated as true

Value

data frame containing patient IDs and time intervals (optional)

Examples

atlas.query(atlas.connect('http://localhost:8080'), 'ICD9=250.50')
atlas.query(atlas.connect('http://localhost:8080'), 'ICD9=250.50', TRUE)

atlas documentation built on May 2, 2019, 5:07 a.m.