residualPlot: Draw a residual plot with an object of class coxph

In autoReg: Automatic Linear and Logistic Regression and Survival Analysis

Draw a residual plot with an object of class coxph

Description

Draw a residual plot with an object of class coxph

Usage

residualPlot(
  fit,
  type = "martingale",
  vars = NULL,
  ncol = 2,
  show.point = TRUE,
  se = TRUE,
  topn = 5,
  labelsize = 4
)

Arguments

fit	An object of class coxph or survreg
type	character One of the c("martingale","deviance","score","schoenfeld", "dfbeta","dfbetas","scaledsch","partial"). Default value is "martingale".
vars	character Names of variables to plot. default value is NULL
ncol	numeric number of columns
show.point	logical Whether or not show point
se	logical Whether or not show se
topn	numeric number of data to be labelled
labelsize	numeric size of label

Value

A patchwork object

Examples

require(survival)
data(cancer)
fit=coxph(Surv(time,status==2)~log(bili)+age+cluster(edema),data=pbc)
residualPlot(fit)
residualPlot(fit,vars="age")
fit=coxph(Surv(time,status==2)~age,data=pbc)
residualPlot(fit)
residualPlot(fit,"partial")
fit=coxph(Surv(time,status)~rx+sex+logWBC,data=anderson)
residualPlot(fit,ncol=3)
## Not run: 
data(pharmacoSmoking,package="asaur")
fit=coxph(Surv(ttr,relapse)~grp+employment+age,data=pharmacoSmoking)
residualPlot(fit)
residualPlot(fit,var="age")
residualPlot(fit,type="dfbeta")
residualPlot(fit,type="dfbeta",var="age")
residualPlot(fit,type="dfbeta",var="employment")
residualPlot(fit,type="dfbeta",var="employmentother")
pharmacoSmoking$ttr[pharmacoSmoking$ttr==0]=0.5
fit=survreg(Surv(ttr,relapse)~grp+age+employment,data=pharmacoSmoking,dist="weibull")
residualPlot(fit,type="response")
residualPlot(fit,type="deviance")
residualPlot(fit,type="dfbeta",vars="age")
fit=survreg(Surv(time,status)~ph.ecog+sex*age,data=lung,dist="weibull")
residualPlot(fit,"dfbeta")
residualPlot(fit,"deviance")

## End(Not run)

autoReg documentation built on Nov. 14, 2023, 9:07 a.m.