View source: R/align_test_files.R
align_test_files | R Documentation |
align_test_files
aligns test (re-recorded) sound files.
align_test_files(X, Y, output = "est", path = NULL, by.song = TRUE, marker = "start", ...)
X |
object of class 'data.frame', 'selection_table' or 'extended_selection_table' (the last 2 classes are created by the function |
Y |
object of class 'data.frame' with the output of |
output |
Character vector of length 1 to determine if an extended selection table ('est', default) or a data.frame ("data.frame"). |
path |
Character string containing the directory path where test (re-recorded) sound files are found. |
by.song |
Logical argument to indicate if the extended selection table should be created by song (see 'by.song' |
marker |
Character string to define whether a "start" or "end" marker would be used for aligning re-recorded sound files. Default is "start". |
... |
Additional arguments to be passed to |
The function aligns signals found in re-recorded sound files according to a master sound file referenced in 'X'. The function outputs a 'extended selection table'.
An extended selection table with the aligned signals from test (re-recorded) sound files.
Marcelo Araya-Salas (marcelo.araya@ucr.ac.cr)
Araya-Salas, M. (2020). baRulho: baRulho: quantifying habitat-induced degradation of (animal) acoustic signals in R. R package version 1.0.2
spcc_align
; search_templates
## Not run: # set temporary directory td <- tempdir() # load example data from warbleR data(list = c("Phae.long1", "Phae.long2", "Phae.long3", "Phae.long4", "lbh_selec_table")) # save sound files to temporary folder writeWave(Phae.long1, file.path(td, "Phae.long1.wav")) writeWave(Phae.long2, file.path(td, "Phae.long2.wav")) writeWave(Phae.long3, file.path(td, "Phae.long3.wav")) writeWave(Phae.long4, file.path(td, "Phae.long4.wav")) # make an extended selection table est <- warbleR::selection_table(X = lbh_selec_table, extended = TRUE, confirm.extended = FALSE, path = td, pb = FALSE) # create master sound file master.sf <- master_sound_file(X = est, file.name = "example_master", dest.path = td, gap.duration = 0.3) # read master exmp.master <- readWave(file.path(td, "example_master.wav")) # add 1 s silence exmp.test1 <- addsilw(wave = exmp.master, at = "start", d = 1, output = "Wave", f = exmp.master@samp.rate) exmp.test2 <- addsilw(wave = exmp.master, at = "start", d = 2, output = "Wave", f = exmp.master@samp.rate) # create noise ns <- noisew(f = exmp.master@samp.rate, d = duration(exmp.test2) + 1, output = "Wave") # make noise exactly the same length and add noise to 2 examples exmp.test1@left <- exmp.test1@left + (ns@left[1:length(exmp.test1@left)] * 500) exmp.test2@left <- exmp.test2@left + (ns@left[1:length(exmp.test2@left)] * 500) # normalize before saving exmp.test1 <- normalize(exmp.test1, unit = "16") exmp.test2 <- normalize(exmp.test2, unit = "16") # save examples writeWave(object = exmp.test1, filename = file.path(td, "example_test1.wav"), extensible = FALSE) writeWave(object = exmp.test2, filename = file.path(td, "example_test2.wav"), extensible = FALSE) # find tempaltes found.templts <- search_templates(X = master.sf, template.rows = which(master.sf$orig.sound.file == "start_marker"), test.files = c("example_test1.wav", "example_test2.wav"), path = td, pb = FALSE) # align signals and output extended selection table alg.tests <- align_test_files(X = master.sf, Y = found.templts, path = td, pb = FALSE) ## End(Not run)
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