Files in baseq

Basic Sequence Processing Tool for Biological Data

NEWS.md README.md R/discovery.R R/classes.R R/wetlab.R R/data.R R/conversions.R R/plots.R R/analysis.R R/io.R R/utils.R R/processing.R inst/doc/baseq-vignette.Rmd inst/doc/baseq-vignette.R tests/testthat.R tests/testthat/test-processing.R tests/testthat/test-scientific.R tests/testthat/test-plots.R tests/testthat/test-io.R vignettes/baseq-vignette.Rmd man/calculate_codon_usage.Rd man/calculate_tm.Rd man/plot_hydrophobicity.Rd man/dna_to_protein.Rd man/translate.Rd man/as_baseq_rna.Rd man/as_Biostrings.Rd man/rna_to_protein.Rd man/write_seq.Rd man/search_motif.Rd man/calculate_pi.Rd man/count_kmers.Rd man/count_bases.Rd man/count_pattern.Rd man/plot_dotplot.Rd man/gc_content.Rd man/simulate_pcr.Rd man/calculate_assembly_stats.Rd man/filter_fastq_quality.Rd man/rev_comp.Rd man/summarize_fasta.Rd man/plot_aa_composition.Rd man/simulate_fastq.Rd man/as_baseq_dna.Rd man/clean_file.Rd man/simulate_fasta.Rd man/get_genetic_code.Rd man/clean_seq.Rd man/simulate_digestion.Rd man/find_cpg_islands.Rd man/reverse_translate.Rd man/simulate_sequence.Rd man/rna_to_dna.Rd man/find_longest_orf.Rd man/plot_gc_skew.Rd man/read_seq.Rd man/fastq_to_fasta.Rd man/dna_to_rna.Rd man/calculate_mw.Rd man/calculate_identity.Rd man/calculate_charge.Rd man/shuffle_sequence.Rd man/sars_fragment.Rd