filter_fastq_quality: Quality Filter FASTQ
In baseq: Basic Sequence Processing Tool for Biological Data
filter_fastq_quality R Documentation
Quality Filter FASTQ
Description
Filters FASTQ reads based on average quality score.
Usage
filter_fastq_quality(
input_file,
output_file,
min_avg_quality = 20,
phred_offset = 33
)
Arguments
input_file
Path to input FASTQ
output_file
Path to output FASTQ
min_avg_quality
Minimum average Phred score (default: 20)
phred_offset
Phred offset (default: 33)
baseq documentation built on March 12, 2026, 1:07 a.m.
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| filter_fastq_quality | R Documentation |
Quality Filter FASTQ
Description
Filters FASTQ reads based on average quality score.
Usage
filter_fastq_quality(
input_file,
output_file,
min_avg_quality = 20,
phred_offset = 33
)
Arguments
input_file |
Path to input FASTQ |
output_file |
Path to output FASTQ |
min_avg_quality |
Minimum average Phred score (default: 20) |
phred_offset |
Phred offset (default: 33) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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