A hodgepodge of hopefully helpful functions. Two of these perform shrinkage estimation: one using a simple weighted method where the user can specify the degree of shrinkage required, and one using James-Stein shrinkage estimation for the case of unequal variances.

Author | Andrew McKenzie [aut, cre] |

Date of publication | 2016-05-24 16:32:42 |

Maintainer | Andrew McKenzie <amckenz@gmail.com> |

License | GPL-3 |

Version | 1.0.0 |

**a_hat_mle:** Likelihood function of the James-Stein shrinkage factor.

**allDups:** Identify all duplicates values in a vector.

**bayesbio:** bayesbio: Miscellaneous functions useful in bioinformatics...

**cbindFill:** cbind while converting missing entries to NA.

**createStrings:** Creates random, unique character strings.

**ggHorizBar:** Create a color-labeled horizontal bar plot in ggplot2.

**jaccardSets:** Jaccard index of two character vectors.

**mgsub:** Multiple pattern gsub.

**nearestTime:** Merge data frames based on the nearest datetime differences.

**nearestTimeandID:** Merge data frames based on the nearest datetime differences...

**p.adjust.nlp:** Adjust p-values where n is less than p.

**pubmedQuery:** Perform PubMed queries on 2x2 combinations of term vectors.

**subsupDiag:** Add values to the super- and sub-diagonals of a matrix.

**unequalVarShrink:** Perform James-Stein shrinkage estimation using unequal...

**weightedShrink:** Weighted shrinkage estimation.

bayesbio

bayesbio/tests

bayesbio/tests/testthat.R

bayesbio/tests/testthat

bayesbio/tests/testthat/test_dates.R

bayesbio/tests/testthat/test_misc.R

bayesbio/NAMESPACE

bayesbio/NEWS.md

bayesbio/R

bayesbio/R/pubmedQuery.R
bayesbio/R/ggHorizBar.R
bayesbio/R/p.adjust.nlp.R
bayesbio/R/mergeTime.R
bayesbio/R/cbindFill.R
bayesbio/R/supsubDiag.R
bayesbio/R/weightedShrinkage.R
bayesbio/R/bayesbio_package.R
bayesbio/R/unequalVarShink.R
bayesbio/R/allDups.R
bayesbio/R/mgsub.R
bayesbio/R/jaccardSets.R
bayesbio/R/createStrings.R
bayesbio/MD5

bayesbio/DESCRIPTION

bayesbio/man

bayesbio/man/a_hat_mle.Rd
bayesbio/man/pubmedQuery.Rd
bayesbio/man/nearestTimeandID.Rd
bayesbio/man/nearestTime.Rd
bayesbio/man/createStrings.Rd
bayesbio/man/p.adjust.nlp.Rd
bayesbio/man/weightedShrink.Rd
bayesbio/man/unequalVarShrink.Rd
bayesbio/man/cbindFill.Rd
bayesbio/man/mgsub.Rd
bayesbio/man/subsupDiag.Rd
bayesbio/man/jaccardSets.Rd
bayesbio/man/allDups.Rd
bayesbio/man/ggHorizBar.Rd
bayesbio/man/bayesbio.Rd
Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.