plot.JAGSrun: Plot JAGSrun object

In bayesmix: Bayesian Mixture Models with JAGS

Plot JAGSrun object

Description

Plots mcmc chains of a JAGSrun object.

Usage

## S3 method for class 'JAGSrun'
plot(x, variables = NULL, trace = TRUE, density = TRUE,
     smooth = TRUE, bwf, num, xlim, auto.layout = TRUE,
     ask = interactive(), ...)

Arguments

x	a JAGSrun object.
variables	names of variables which shall be plotted. Default are all names of results except those with a column dimension larger than the number of classes k.
trace	plot trace of each variable.
density	plot density estimate of each variable.
smooth	draw a smooth line through trace plots.
bwf	bandwidth function for density plots.
num	if not all classes of a variable shall be plotted, a subset can be specified.
xlim	if not specified, the range of each variable over all classes is taken as default.
auto.layout	automatically generate output format.
ask	prompt user before each page of plots.
...	further arguments for densityplot.

Details

Adapted from plot.mcmc.

Currently only implemented for JAGSrun objects with model of class BMMmodel. Otherwise the default plot method for the results of the JAGSrun object is called (plot.mcmc).

Author(s)

Bettina Gruen

See Also

plot.mcmc, BMMdiag, BMMposteriori

bayesmix documentation built on April 14, 2023, 12:27 a.m.