bayesplot: Plotting for Bayesian Models

Plotting functions for posterior analysis, model checking, and MCMC diagnostics. The package is designed not only to provide convenient functionality for users, but also a common set of functions that can be easily used by developers working on a variety of R packages for Bayesian modeling, particularly (but not exclusively) packages interfacing with Stan.

Author
Jonah Gabry [aut, cre], Paul-Christian Buerkner [ctb]
Date of publication
2016-11-18 23:12:40
Maintainer
Jonah Gabry <jsg2201@columbia.edu>
License
GPL (>= 3)
Version
1.0.0
URLs

View on CRAN

Man pages

available_ppc
Get or view the names of available plotting functions
bayesplot-colors
Set, get, or view color schemes
bayesplot-extractors
Extract quantities needed for plotting from model objects
bayesplot-helpers
Convenience functions for adding or changing plot details
bayesplot-package
Plots for Bayesian Models
example-data
Example draws to use in demonstrations and tests
MCMC-combos
Combination plots
MCMC-diagnostics
Autocorrelation, Rhat, and effective sample size
MCMC-distributions
Histograms and kernel density plots of MCMC draws
MCMC-intervals
Plot interval estimates from MCMC draws
MCMC-nuts
Diagnostic plots for the No-U-Turn-Sampler (NUTS)
MCMC-overview
Plots for Markov chain Monte Carlo simulations
MCMC-scatterplots
Scatterplots of MCMC draws
MCMC-traces
Traceplot (time series plot) of MCMC draws
PPC-distributions
PPC distributions
PPC-errors
PPC errors
pp_check
Posterior predictive checks (S3 generic and default method)
PPC-intervals
PPC intervals
PPC-overview
Graphical posterior predictive checking
PPC-scatterplots
PPC scatterplots
PPC-test-statistics
PPC test statistics
theme_default
Default plotting theme

Files in this package

bayesplot
bayesplot/inst
bayesplot/inst/doc
bayesplot/inst/doc/MCMC.R
bayesplot/inst/doc/MCMC.html
bayesplot/inst/doc/MCMC-diagnostics.R
bayesplot/inst/doc/MCMC-diagnostics.html
bayesplot/inst/doc/PPC.Rmd
bayesplot/inst/doc/PPC.html
bayesplot/inst/doc/MCMC-diagnostics.Rmd
bayesplot/inst/doc/PPC.R
bayesplot/inst/doc/MCMC.Rmd
bayesplot/tests
bayesplot/tests/testthat.R
bayesplot/tests/testthat
bayesplot/tests/testthat/Rplots.pdf
bayesplot/tests/testthat/test-ppc-scatterplots.R
bayesplot/tests/testthat/test-helpers-mcmc.R
bayesplot/tests/testthat/test-mcmc-distributions.R
bayesplot/tests/testthat/test-ppc-errors.R
bayesplot/tests/testthat/test-mcmc-intervals.R
bayesplot/tests/testthat/test-aesthetics.R
bayesplot/tests/testthat/test-example-draws.R
bayesplot/tests/testthat/test-available_ppc.R
bayesplot/tests/testthat/test-helpers-ppc.R
bayesplot/tests/testthat/data-for-binomial.rda
bayesplot/tests/testthat/test-mcmc-nuts.R
bayesplot/tests/testthat/test-mcmc-scatterplots.R
bayesplot/tests/testthat/test-extractors.R
bayesplot/tests/testthat/test-mcmc-traces.R
bayesplot/tests/testthat/data-for-mcmc-tests.R
bayesplot/tests/testthat/test-helpers-shared.R
bayesplot/tests/testthat/test-pp_check.R
bayesplot/tests/testthat/test-ppc-input-validation.R
bayesplot/tests/testthat/test-convenience-functions.R
bayesplot/tests/testthat/test-mcmc-combo.R
bayesplot/tests/testthat/test-ppc-test-statistics.R
bayesplot/tests/testthat/data-for-ppc-tests.R
bayesplot/tests/testthat/test-ppc-intervals.R
bayesplot/tests/testthat/test-mcmc-diagnostics.R
bayesplot/tests/testthat/test-ppc-distributions.R
bayesplot/NAMESPACE
bayesplot/R
bayesplot/R/bayesplot-extractors.R
bayesplot/R/mcmc-scatterplots.R
bayesplot/R/pp_check.R
bayesplot/R/available-module-functions.R
bayesplot/R/mcmc-distributions.R
bayesplot/R/sysdata.rda
bayesplot/R/helpers-mcmc.R
bayesplot/R/ppc-overview.R
bayesplot/R/mcmc-traces.R
bayesplot/R/ppc-intervals.R
bayesplot/R/mcmc-alg-nuts.R
bayesplot/R/helpers-shared.R
bayesplot/R/ppc-test-statistics.R
bayesplot/R/ppc-errors.R
bayesplot/R/bayesplot-colors.R
bayesplot/R/helpers-ppc.R
bayesplot/R/helpers-testthat.R
bayesplot/R/example-data.R
bayesplot/R/mcmc-combo.R
bayesplot/R/mcmc-overview.R
bayesplot/R/helpers-gg.R
bayesplot/R/mcmc-diagnostics.R
bayesplot/R/mcmc-intervals.R
bayesplot/R/bayesplot-package.R
bayesplot/R/ppc-distributions.R
bayesplot/R/bayesplot-ggplot-themes.R
bayesplot/R/bayesplot-helpers.R
bayesplot/R/zzz.R
bayesplot/R/ppc-scatterplots.R
bayesplot/vignettes
bayesplot/vignettes/PPC.Rmd
bayesplot/vignettes/MCMC-diagnostics.Rmd
bayesplot/vignettes/MCMC.Rmd
bayesplot/MD5
bayesplot/build
bayesplot/build/vignette.rds
bayesplot/DESCRIPTION
bayesplot/man
bayesplot/man/PPC-errors.Rd
bayesplot/man/figures
bayesplot/man/figures/bayesplot2.png
bayesplot/man/figures/bayesplot3.png
bayesplot/man/figures/stanlogo.png
bayesplot/man/figures/bayesplot1.png
bayesplot/man/MCMC-traces.Rd
bayesplot/man/PPC-intervals.Rd
bayesplot/man/PPC-overview.Rd
bayesplot/man/example-data.Rd
bayesplot/man/MCMC-nuts.Rd
bayesplot/man/pp_check.Rd
bayesplot/man/MCMC-overview.Rd
bayesplot/man/PPC-distributions.Rd
bayesplot/man/MCMC-combos.Rd
bayesplot/man/MCMC-distributions.Rd
bayesplot/man/theme_default.Rd
bayesplot/man/bayesplot-helpers.Rd
bayesplot/man/PPC-scatterplots.Rd
bayesplot/man/available_ppc.Rd
bayesplot/man/bayesplot-package.Rd
bayesplot/man/MCMC-intervals.Rd
bayesplot/man/bayesplot-colors.Rd
bayesplot/man/PPC-test-statistics.Rd
bayesplot/man/MCMC-diagnostics.Rd
bayesplot/man/bayesplot-extractors.Rd
bayesplot/man/MCMC-scatterplots.Rd