bayesplot: Plotting for Bayesian Models

Plotting functions for posterior analysis, model checking, and MCMC diagnostics. The package is designed not only to provide convenient functionality for users, but also a common set of functions that can be easily used by developers working on a variety of R packages for Bayesian modeling, particularly (but not exclusively) packages interfacing with Stan.

Install the latest version of this package by entering the following in R:
install.packages("bayesplot")
AuthorJonah Gabry [aut, cre], Paul-Christian Buerkner [ctb]
Date of publication2017-04-12 15:26:17 UTC
MaintainerJonah Gabry <jsg2201@columbia.edu>
LicenseGPL (>= 3)
Version1.2.0
http://mc-stan.org/, https://groups.google.com/forum/#!forum/stan-users

View on CRAN

Functions

abline_01 Man page
available_mcmc Man page
available_ppc Man page
bayesplot Man page
bayesplot-colors Man page
bayesplot-extractors Man page
bayesplot_grid Man page
bayesplot-helpers Man page
bayesplot-package Man page
color_scheme_get Man page
color_scheme_set Man page
color_scheme_view Man page
example-data Man page
example_group_data Man page
example_mcmc_draws Man page
example_x_data Man page
example_y_data Man page
example_yrep_draws Man page
facet_bg Man page
facet_text Man page
grid_lines Man page
hline_0 Man page
hline_at Man page
lbub Man page
legend_move Man page
legend_none Man page
legend_text Man page
log_posterior Man page
log_posterior.stanfit Man page
log_posterior.stanreg Man page
MCMC Man page
mcmc_acf Man page
mcmc_acf_bar Man page
mcmc_areas Man page
mcmc_combo Man page
MCMC-combos Man page
mcmc_dens Man page
mcmc_dens_overlay Man page
MCMC-diagnostics Man page
MCMC-distributions Man page
mcmc_hex Man page
mcmc_hist Man page
mcmc_hist_by_chain Man page
mcmc_intervals Man page
MCMC-intervals Man page
mcmc_neff Man page
mcmc_neff_hist Man page
MCMC-nuts Man page
mcmc_nuts_acceptance Man page
mcmc_nuts_divergence Man page
mcmc_nuts_energy Man page
mcmc_nuts_stepsize Man page
mcmc_nuts_treedepth Man page
MCMC-overview Man page
mcmc_pairs Man page
MCMC-recover Man page
mcmc_recover_hist Man page
mcmc_recover_intervals Man page
mcmc_recover_scatter Man page
mcmc_rhat Man page
mcmc_rhat_hist Man page
mcmc_scatter Man page
MCMC-scatterplots Man page
mcmc_trace Man page
mcmc_trace_highlight Man page
MCMC-traces Man page
mcmc_violin Man page
neff_ratio Man page
neff_ratio.stanfit Man page
neff_ratio.stanreg Man page
NUTS Man page
nuts_params Man page
nuts_params.list Man page
nuts_params.stanfit Man page
nuts_params.stanreg Man page
overlay_function Man page
pairs_condition Man page
pairs_style_np Man page
panel_bg Man page
plot_bg Man page
PPC Man page
ppc_bars Man page
ppc_bars_grouped Man page
ppc_boxplot Man page
ppc_dens Man page
ppc_dens_overlay Man page
PPC-discrete Man page
PPC-distributions Man page
ppc_ecdf_overlay Man page
ppc_error_binned Man page
ppc_error_hist Man page
ppc_error_hist_grouped Man page
PPC-errors Man page
ppc_error_scatter Man page
ppc_error_scatter_avg Man page
ppc_error_scatter_avg_vs_x Man page
ppc_freqpoly Man page
ppc_freqpoly_grouped Man page
pp_check Man page
pp_check.default Man page
ppc_hist Man page
ppc_intervals Man page
PPC-intervals Man page
ppc_intervals_grouped Man page
PPC-loo Man page
ppc_loo_intervals Man page
ppc_loo_pit Man page
ppc_loo_ribbon Man page
PPC-overview Man page
ppc_ribbon Man page
ppc_ribbon_grouped Man page
ppc_rootogram Man page
ppc_scatter Man page
ppc_scatter_avg Man page
ppc_scatter_avg_grouped Man page
PPC-scatterplots Man page
ppc_stat Man page
ppc_stat_2d Man page
ppc_stat_freqpoly_grouped Man page
ppc_stat_grouped Man page
PPC-test-statistics Man page
ppc_violin_grouped Man page
rhat Man page
rhat.stanfit Man page
rhat.stanreg Man page
theme_default Man page
vline_0 Man page
vline_at Man page
xaxis_text Man page
xaxis_ticks Man page
xaxis_title Man page
yaxis_text Man page
yaxis_ticks Man page
yaxis_title Man page

Files

inst
inst/CITATION
inst/doc
inst/doc/MCMC.R
inst/doc/MCMC.html
inst/doc/MCMC-diagnostics.R
inst/doc/MCMC-diagnostics.html
inst/doc/PPC.Rmd
inst/doc/PPC.html
inst/doc/MCMC-diagnostics.Rmd
inst/doc/PPC.R
inst/doc/MCMC.Rmd
tests
tests/testthat.R
tests/testthat
tests/testthat/Rplots.pdf
tests/testthat/test-ppc-scatterplots.R tests/testthat/test-helpers-mcmc.R tests/testthat/test-mcmc-distributions.R tests/testthat/test-ppc-discrete.R tests/testthat/test-ppc-errors.R tests/testthat/test-mcmc-intervals.R tests/testthat/test-mcmc-recover.R tests/testthat/test-aesthetics.R tests/testthat/test-example-draws.R tests/testthat/test-available_ppc.R tests/testthat/test-helpers-ppc.R
tests/testthat/data-for-binomial.rda
tests/testthat/test-mcmc-nuts.R tests/testthat/test-mcmc-scatterplots.R tests/testthat/test-extractors.R tests/testthat/test-mcmc-traces.R tests/testthat/data-for-mcmc-tests.R tests/testthat/test-helpers-shared.R tests/testthat/test-ppc-loo.R tests/testthat/test-pp_check.R tests/testthat/test-ppc-input-validation.R tests/testthat/test-convenience-functions.R tests/testthat/test-mcmc-combo.R tests/testthat/test-ppc-test-statistics.R tests/testthat/test-bayesplot_grid.R tests/testthat/data-for-ppc-tests.R tests/testthat/test-ppc-intervals.R tests/testthat/test-mcmc-diagnostics.R tests/testthat/test-ppc-distributions.R
NAMESPACE
NEWS.md
R
R/bayesplot-extractors.R R/mcmc-scatterplots.R R/pp_check.R R/available-module-functions.R R/mcmc-distributions.R
R/sysdata.rda
R/helpers-mcmc.R R/ppc-overview.R R/mcmc-traces.R R/ppc-intervals.R R/mcmc-alg-nuts.R R/helpers-shared.R R/ppc-test-statistics.R R/ppc-errors.R R/bayesplot-colors.R R/bayesplot_grid.R R/helpers-ppc.R R/ppc-discrete.R R/helpers-testthat.R R/example-data.R R/mcmc-combo.R R/ppc-loo.R R/mcmc-overview.R R/helpers-gg.R R/mcmc-diagnostics.R R/mcmc-intervals.R R/bayesplot-package.R R/ppc-distributions.R R/mcmc-recover.R R/bayesplot-ggplot-themes.R R/bayesplot-helpers.R R/zzz.R R/ppc-scatterplots.R
vignettes
vignettes/PPC.Rmd
vignettes/MCMC-diagnostics.Rmd
vignettes/children
vignettes/children/SETTINGS-knitr.txt
vignettes/MCMC.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/PPC-errors.Rd
man/figures
man/figures/bayesplot2.png
man/figures/bayesplot3.png
man/figures/stanlogo.png
man/figures/bayesplot1.png
man/MCMC-traces.Rd man/PPC-intervals.Rd man/MCMC-recover.Rd man/PPC-overview.Rd man/example-data.Rd man/MCMC-nuts.Rd man/pp_check.Rd man/MCMC-overview.Rd man/PPC-distributions.Rd man/PPC-discrete.Rd man/MCMC-combos.Rd man/MCMC-distributions.Rd man/theme_default.Rd man/bayesplot-helpers.Rd man/PPC-scatterplots.Rd man/PPC-loo.Rd man/available_ppc.Rd man/bayesplot_grid.Rd man/bayesplot-package.Rd man/MCMC-intervals.Rd man/bayesplot-colors.Rd man/PPC-test-statistics.Rd man/MCMC-diagnostics.Rd man/bayesplot-extractors.Rd man/MCMC-scatterplots.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.