bayesplot: Plotting for Bayesian Models

Plotting functions for posterior analysis, model checking, and MCMC diagnostics. The package is designed not only to provide convenient functionality for users, but also a common set of functions that can be easily used by developers working on a variety of R packages for Bayesian modeling, particularly (but not exclusively) packages interfacing with Stan.

AuthorJonah Gabry [aut, cre], Paul-Christian Buerkner [ctb]
Date of publication2016-12-20 08:16:13
MaintainerJonah Gabry <jsg2201@columbia.edu>
LicenseGPL (>= 3)
Version1.1.0
http://mc-stan.org/, https://groups.google.com/forum/#!forum/stan-users

View on CRAN

Functions

available_mcmc Man page
available_ppc Man page
bayesplot Man page
bayesplot-colors Man page
bayesplot-extractors Man page
bayesplot_grid Man page
bayesplot-helpers Man page
bayesplot-package Man page
color_scheme_get Man page
color_scheme_set Man page
color_scheme_view Man page
example-data Man page
example_group_data Man page
example_mcmc_draws Man page
example_x_data Man page
example_y_data Man page
example_yrep_draws Man page
facet_bg Man page
facet_text Man page
grid_lines Man page
hline_0 Man page
hline_at Man page
lbub Man page
legend_move Man page
legend_none Man page
legend_text Man page
log_posterior Man page
log_posterior.stanfit Man page
log_posterior.stanreg Man page
MCMC Man page
mcmc_acf Man page
mcmc_acf_bar Man page
mcmc_areas Man page
mcmc_combo Man page
MCMC-combos Man page
mcmc_dens Man page
mcmc_dens_overlay Man page
MCMC-diagnostics Man page
MCMC-distributions Man page
mcmc_hist Man page
mcmc_hist_by_chain Man page
mcmc_intervals Man page
MCMC-intervals Man page
mcmc_neff Man page
mcmc_neff_hist Man page
MCMC-nuts Man page
mcmc_nuts_acceptance Man page
mcmc_nuts_divergence Man page
mcmc_nuts_energy Man page
mcmc_nuts_stepsize Man page
mcmc_nuts_treedepth Man page
MCMC-overview Man page
MCMC-recover Man page
mcmc_recover_intervals Man page
mcmc_rhat Man page
mcmc_rhat_hist Man page
mcmc_scatter Man page
MCMC-scatterplots Man page
mcmc_trace Man page
mcmc_trace_highlight Man page
MCMC-traces Man page
mcmc_violin Man page
neff_ratio Man page
neff_ratio.stanfit Man page
neff_ratio.stanreg Man page
NUTS Man page
nuts_params Man page
nuts_params.list Man page
nuts_params.stanfit Man page
nuts_params.stanreg Man page
panel_bg Man page
plot_bg Man page
PPC Man page
ppc_boxplot Man page
ppc_dens Man page
ppc_dens_overlay Man page
PPC-distributions Man page
ppc_ecdf_overlay Man page
ppc_error_binned Man page
ppc_error_hist Man page
ppc_error_hist_grouped Man page
PPC-errors Man page
ppc_error_scatter Man page
ppc_error_scatter_avg Man page
ppc_error_scatter_avg_vs_x Man page
ppc_freqpoly Man page
ppc_freqpoly_grouped Man page
pp_check Man page
pp_check.default Man page
ppc_hist Man page
ppc_intervals Man page
PPC-intervals Man page
ppc_intervals_grouped Man page
PPC-overview Man page
ppc_ribbon Man page
ppc_ribbon_grouped Man page
ppc_scatter Man page
ppc_scatter_avg Man page
ppc_scatter_avg_grouped Man page
PPC-scatterplots Man page
ppc_stat Man page
ppc_stat_2d Man page
ppc_stat_freqpoly_grouped Man page
ppc_stat_grouped Man page
PPC-test-statistics Man page
ppc_violin_grouped Man page
rhat Man page
rhat.stanfit Man page
rhat.stanreg Man page
theme_default Man page
vline_0 Man page
vline_at Man page
xaxis_text Man page
xaxis_ticks Man page
xaxis_title Man page
yaxis_text Man page
yaxis_ticks Man page
yaxis_title Man page

Files

bayesplot
bayesplot/inst
bayesplot/inst/doc
bayesplot/inst/doc/MCMC.R
bayesplot/inst/doc/MCMC.html
bayesplot/inst/doc/MCMC-diagnostics.R
bayesplot/inst/doc/MCMC-diagnostics.html
bayesplot/inst/doc/PPC.Rmd
bayesplot/inst/doc/PPC.html
bayesplot/inst/doc/MCMC-diagnostics.Rmd
bayesplot/inst/doc/PPC.R
bayesplot/inst/doc/MCMC.Rmd
bayesplot/tests
bayesplot/tests/testthat.R
bayesplot/tests/testthat
bayesplot/tests/testthat/Rplots.pdf
bayesplot/tests/testthat/test-ppc-scatterplots.R
bayesplot/tests/testthat/test-helpers-mcmc.R
bayesplot/tests/testthat/test-mcmc-distributions.R
bayesplot/tests/testthat/test-ppc-errors.R
bayesplot/tests/testthat/test-mcmc-intervals.R
bayesplot/tests/testthat/test-mcmc-recover.R
bayesplot/tests/testthat/test-aesthetics.R
bayesplot/tests/testthat/test-example-draws.R
bayesplot/tests/testthat/test-available_ppc.R
bayesplot/tests/testthat/test-helpers-ppc.R
bayesplot/tests/testthat/data-for-binomial.rda
bayesplot/tests/testthat/test-mcmc-nuts.R
bayesplot/tests/testthat/test-mcmc-scatterplots.R
bayesplot/tests/testthat/test-extractors.R
bayesplot/tests/testthat/test-mcmc-traces.R
bayesplot/tests/testthat/data-for-mcmc-tests.R
bayesplot/tests/testthat/test-helpers-shared.R
bayesplot/tests/testthat/test-pp_check.R
bayesplot/tests/testthat/test-ppc-input-validation.R
bayesplot/tests/testthat/test-convenience-functions.R
bayesplot/tests/testthat/test-mcmc-combo.R
bayesplot/tests/testthat/test-ppc-test-statistics.R
bayesplot/tests/testthat/test-bayesplot_grid.R
bayesplot/tests/testthat/data-for-ppc-tests.R
bayesplot/tests/testthat/test-ppc-intervals.R
bayesplot/tests/testthat/test-mcmc-diagnostics.R
bayesplot/tests/testthat/test-ppc-distributions.R
bayesplot/NAMESPACE
bayesplot/NEWS.md
bayesplot/R
bayesplot/R/bayesplot-extractors.R bayesplot/R/mcmc-scatterplots.R bayesplot/R/pp_check.R bayesplot/R/available-module-functions.R bayesplot/R/mcmc-distributions.R
bayesplot/R/sysdata.rda
bayesplot/R/helpers-mcmc.R bayesplot/R/ppc-overview.R bayesplot/R/mcmc-traces.R bayesplot/R/ppc-intervals.R bayesplot/R/mcmc-alg-nuts.R bayesplot/R/helpers-shared.R bayesplot/R/ppc-test-statistics.R bayesplot/R/ppc-errors.R bayesplot/R/bayesplot-colors.R bayesplot/R/bayesplot_grid.R bayesplot/R/helpers-ppc.R bayesplot/R/helpers-testthat.R bayesplot/R/example-data.R bayesplot/R/mcmc-combo.R bayesplot/R/mcmc-overview.R bayesplot/R/helpers-gg.R bayesplot/R/mcmc-diagnostics.R bayesplot/R/mcmc-intervals.R bayesplot/R/bayesplot-package.R bayesplot/R/ppc-distributions.R bayesplot/R/mcmc-recover.R bayesplot/R/bayesplot-ggplot-themes.R bayesplot/R/bayesplot-helpers.R bayesplot/R/zzz.R bayesplot/R/ppc-scatterplots.R
bayesplot/vignettes
bayesplot/vignettes/PPC.Rmd
bayesplot/vignettes/MCMC-diagnostics.Rmd
bayesplot/vignettes/children
bayesplot/vignettes/children/SETTINGS-knitr.txt
bayesplot/vignettes/MCMC.Rmd
bayesplot/MD5
bayesplot/build
bayesplot/build/vignette.rds
bayesplot/DESCRIPTION
bayesplot/man
bayesplot/man/PPC-errors.Rd
bayesplot/man/figures
bayesplot/man/figures/bayesplot2.png
bayesplot/man/figures/bayesplot3.png
bayesplot/man/figures/stanlogo.png
bayesplot/man/figures/bayesplot1.png
bayesplot/man/MCMC-traces.Rd bayesplot/man/PPC-intervals.Rd bayesplot/man/MCMC-recover.Rd bayesplot/man/PPC-overview.Rd bayesplot/man/example-data.Rd bayesplot/man/MCMC-nuts.Rd bayesplot/man/pp_check.Rd bayesplot/man/MCMC-overview.Rd bayesplot/man/PPC-distributions.Rd bayesplot/man/MCMC-combos.Rd bayesplot/man/MCMC-distributions.Rd bayesplot/man/theme_default.Rd bayesplot/man/bayesplot-helpers.Rd bayesplot/man/PPC-scatterplots.Rd bayesplot/man/available_ppc.Rd bayesplot/man/bayesplot_grid.Rd bayesplot/man/bayesplot-package.Rd bayesplot/man/MCMC-intervals.Rd bayesplot/man/bayesplot-colors.Rd bayesplot/man/PPC-test-statistics.Rd bayesplot/man/MCMC-diagnostics.Rd bayesplot/man/bayesplot-extractors.Rd bayesplot/man/MCMC-scatterplots.Rd

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All documentation is copyright its authors; we didn't write any of that.