bc3net: Gene Regulatory Network Inference with Bc3net

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Implementation of the BC3NET algorithm for gene regulatory network inference (de Matos Simoes and Frank Emmert-Streib, Bagging Statistical Network Inference from Large-Scale Gene Expression Data, PLoS ONE 7(3): e33624, <doi:10.1371/journal.pone.0033624>).

Author
Ricardo de Matos Simoes [aut, cre], Frank Emmert-Streib [aut]
Date of publication
2016-11-28 08:21:04
Maintainer
Ricardo de Matos Simoes <ricardo_dematossimoes@dfci.harvard.edu>
License
GPL (>= 2)
Version
1.0.4

View on CRAN

Man pages

bc3net
Bc3net gene regulatory network inference
bc3net-package
BC3NET Gene Regulatory network Inference
c3mtc
'c3mtc' gene regulatory network inference using c3net with...
enrichment
Function that performs a functional enrichment analysis based...
exanet
Example gene regulatory network for testing purposes only
exgensets
Example gene sets defined from the CPDB database
expmat
Test gene expression dataset
getgcc
Extracting the giant connected component from an igraph...
gpea
Gene pair enrichment analysis (GPEA)
makenull
Generate a mutual information null distribution from a gene...
mimwrap
Wrapper function for mutual information matrix estimators

Files in this package

bc3net
bc3net/NAMESPACE
bc3net/data
bc3net/data/exgensets.rda
bc3net/data/exanet.rda
bc3net/data/expmat.rda
bc3net/R
bc3net/R/bc3net.R
bc3net/R/mat2igraph.R
bc3net/R/binsearch.R
bc3net/R/enrichment.R
bc3net/R/getpval.R
bc3net/R/getgcc.R
bc3net/R/mimwrap.R
bc3net/R/gpea.R
bc3net/R/c3mtc.R
bc3net/R/makenull.R
bc3net/MD5
bc3net/DESCRIPTION
bc3net/man
bc3net/man/exgensets.Rd
bc3net/man/getgcc.Rd
bc3net/man/bc3net.Rd
bc3net/man/expmat.Rd
bc3net/man/enrichment.Rd
bc3net/man/mimwrap.Rd
bc3net/man/makenull.Rd
bc3net/man/c3mtc.Rd
bc3net/man/gpea.Rd
bc3net/man/bc3net-package.Rd
bc3net/man/exanet.Rd