beadarrayFilter: Bead filtering for Illumina bead arrays
Version 1.1.0

This package contains functions to fit the filtering model of Forcheh et al., (2012) which is used to derive the intra-cluster correlation (ICC). Model fitting is done using the modified version of the ``MLM.beadarray" function of Kim and Lin (2011).

AuthorAnyiawung Chiara Forcheh, Geert Verbeke, Adetayo Kasim, Dan Lin, Ziv Shkedy, Willem Talloen, Hinrich WH Gohlmann, Lieven Clement.
Date of publication2013-02-07 20:25:27
MaintainerLieven Clement <lieven.clement@gmail.com>
LicenseGPL-2
Version1.1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("beadarrayFilter")

Popular man pages

beadtypeFilter: Filter Illumina bead arrays
emCDF: Function to plot the empirical cumulative density functions...
iccFun: Intra-cluster correlations (ICC) for Illumina bead arrays
MLM.beadarray: Multi-level Mixed model
varianceplot: Observe between-array and within-array variances.
See all...

All man pages Function index File listing

Man pages

beadtypeFilter: Filter Illumina bead arrays
emCDF: Function to plot the empirical cumulative density functions...
iccFun: Intra-cluster correlations (ICC) for Illumina bead arrays
MLM.beadarray: Multi-level Mixed model
varianceplot: Observe between-array and within-array variances.

Functions

MLM.beadarray Man page Source code
beadtypeFilter Man page Source code
emCDF Man page Source code
iccFun Man page Source code
varianceplot Man page Source code

Files

MD5
R
R/varianceplot.R
R/MLM.beadarray.R
R/iccFun.R
R/emCDF.R
R/beadtypeFilter.R
NAMESPACE
man
man/varianceplot.Rd
man/MLM.beadarray.Rd
man/iccFun.Rd
man/emCDF.Rd
man/beadtypeFilter.Rd
DESCRIPTION
beadarrayFilter documentation built on May 19, 2017, 5:30 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

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