beadarrayFilter: Bead filtering for Illumina bead arrays

Share:

This package contains functions to fit the filtering model of Forcheh et al., (2012) which is used to derive the intra-cluster correlation (ICC). Model fitting is done using the modified version of the ``MLM.beadarray" function of Kim and Lin (2011).

Author
Anyiawung Chiara Forcheh, Geert Verbeke, Adetayo Kasim, Dan Lin, Ziv Shkedy, Willem Talloen, Hinrich WH Gohlmann, Lieven Clement.
Date of publication
2013-02-07 20:25:27
Maintainer
Lieven Clement <lieven.clement@gmail.com>
License
GPL-2
Version
1.1.0

View on CRAN

Man pages

beadtypeFilter
Filter Illumina bead arrays
emCDF
Function to plot the empirical cumulative density functions...
iccFun
Intra-cluster correlations (ICC) for Illumina bead arrays
MLM.beadarray
Multi-level Mixed model
varianceplot
Observe between-array and within-array variances.

Files in this package

beadarrayFilter
beadarrayFilter/MD5
beadarrayFilter/R
beadarrayFilter/R/varianceplot.R
beadarrayFilter/R/MLM.beadarray.R
beadarrayFilter/R/iccFun.R
beadarrayFilter/R/emCDF.R
beadarrayFilter/R/beadtypeFilter.R
beadarrayFilter/NAMESPACE
beadarrayFilter/man
beadarrayFilter/man/varianceplot.Rd
beadarrayFilter/man/MLM.beadarray.Rd
beadarrayFilter/man/iccFun.Rd
beadarrayFilter/man/emCDF.Rd
beadarrayFilter/man/beadtypeFilter.Rd
beadarrayFilter/DESCRIPTION