create_beast2_input_init: Creates the 'init' section of a BEAST2 XML parameter file

In beautier: 'BEAUti' from R

Creates the init section of a BEAST2 XML parameter file

Description

Creates the init section of a BEAST2 XML parameter file

Usage

create_beast2_input_init(inference_model)

Arguments

inference_model

a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.

Value

lines of XML text

Author(s)

Richèl J.C. Bilderbeek

Examples

check_empty_beautier_folder()

inference_model <- init_inference_model(
  input_filename = get_fasta_filename(),
  inference_model = create_test_inference_model()
)
xml <- create_beast2_input_init(
  inference_model = inference_model
)

check_empty_beautier_folder()

beautier documentation built on Nov. 2, 2023, 5:08 p.m.