create_clock_rate_state_node_parameter_xml: Internal function

In beautier: 'BEAUti' from R

Internal function

Description

Creates the clockRate parameter with the name stateNode, such as: <parameter id="ucldStdev.c:[id]" [...] name="stateNode">0.1</parameter>

Usage

create_clock_rate_state_node_parameter_xml(inference_model)

Arguments

inference_model

a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.

Value

the following XML: <parameter id="ucldStdev.c:[id]" lower="0.0" name="stateNode"> 0.1 </parameter>

Author(s)

Richèl J.C. Bilderbeek

Examples

check_empty_beautier_folder()

create_ucld_stdev_state_node_param_xml(
  create_inference_model(
    clock_model = create_rln_clock_model(id = 314)
  )
)

check_empty_beautier_folder()

beautier documentation built on Nov. 2, 2023, 5:08 p.m.