create_distr: General function to create a distribution.

In beautier: 'BEAUti' from R

General function to create a distribution.

Description

General function to create a distribution.

Usage

create_distr(name, id, value = NA, lower = NA, upper = NA, ...)

Arguments

name	the distribution name. Valid names can be found in get_distr_names
id	the distribution's ID
value	the initial value for the MCMC
lower	the lower bound, the lowest possible value
upper	an upper limit of the uniform distribution. If the upper limits needs to be infinity, set upper to Inf.
...	specific distribution parameters

Value

a distribution

Note

Prefer using the named functions create_beta_distr, create_exp_distr, create_gamma_distr, create_inv_gamma_distr, create_laplace_distr, create_log_normal_distr, create_normal_distr, create_one_div_x_distr, create_poisson_distr and create_uniform_distr

See create_beta_distr, create_exp_distr, create_gamma_distr, create_inv_gamma_distr, create_laplace_distr, create_log_normal_distr, create_normal_distr, create_one_div_x_distr, create_poisson_distr and create_uniform_distr for examples how to use those distributions

Author(s)

Richèl J.C. Bilderbeek

Examples

if (is_on_ci()) {

  # Use any distribution
  distr <- create_beta_distr()

  beast2_input_file <- get_beautier_tempfilename()
  create_beast2_input_file(
    input_filename = get_fasta_filename(),
    beast2_input_file,
    tree_prior = create_yule_tree_prior(
      birth_rate_distr = distr
    )
  )
  file.remove(beast2_input_file)

  remove_beautier_folder()
}

beautier documentation built on Nov. 2, 2023, 5:08 p.m.