create_log_normal_distr: Create a log-normal distribution

In beautier: 'BEAUti' from R

Create a log-normal distribution

Description

Create a log-normal distribution

Usage

create_log_normal_distr(
  id = NA,
  m = 0,
  s = 0,
  value = NA,
  lower = NA,
  upper = NA
)

Arguments

id	the distribution's ID
m	the m parameter, a numeric value. For advanced usage, use the structure as returned by create_m_param
s	the s parameter, a numeric value. For advanced usage, use the structure as returned by create_s_param
value	the initial value for the MCMC
lower	the lower bound, the lowest possible value
upper	an upper limit of the uniform distribution. If the upper limits needs to be infinity, set upper to Inf.

Value

a log-normal distribution

Author(s)

Richèl J.C. Bilderbeek

See Also

the function create_distr shows an overview of all supported distributions

Examples

if (is_on_ci()) {

  log_normal_distr <- create_log_normal_distr()

  beast2_input_file <- get_beautier_tempfilename()
  create_beast2_input_file(
    input_filename = get_fasta_filename(),
    beast2_input_file,
    tree_prior = create_yule_tree_prior(
      birth_rate_distr = log_normal_distr
    )
  )
  file.remove(beast2_input_file)

  remove_beautier_folder()
}

beautier documentation built on Nov. 2, 2023, 5:08 p.m.