create_normal_distr: Create an normal distribution

In beautier: 'BEAUti' from R

Create an normal distribution

Description

Create an normal distribution

Usage

create_normal_distr(
  id = NA,
  mean = 0,
  sigma = 1,
  value = NA,
  lower = NA,
  upper = NA
)

Arguments

id	the distribution's ID
mean	the mean parameter, a numeric value. For advanced usage, use the structure as returned by create_mean_param
sigma	the sigma parameter, a numeric value. For advanced usage, use the structure as returned by create_sigma_param
value	the initial value for the MCMC
lower	the lower bound, the lowest possible value
upper	an upper limit of the uniform distribution. If the upper limits needs to be infinity, set upper to Inf.

Value

a normal distribution

Author(s)

Richèl J.C. Bilderbeek

See Also

the function create_distr shows an overview of all supported distributions

Examples

if (is_on_ci()) {

  normal_distr <- create_normal_distr()

  beast2_input_file <- get_beautier_tempfilename()
  create_beast2_input_file(
    input_filename = get_fasta_filename(),
    beast2_input_file,
    tree_prior = create_yule_tree_prior(
      birth_rate_distr = normal_distr
    )
  )
  file.remove(beast2_input_file)

  remove_beautier_folder()
}

beautier documentation built on Nov. 2, 2023, 5:08 p.m.