create_poisson_distr: Create a Poisson distribution

In beautier: 'BEAUti' from R

Create a Poisson distribution

Description

Create a Poisson distribution

Usage

create_poisson_distr(id = NA, lambda = 0, value = NA, lower = NA, upper = NA)

Arguments

id	the distribution's ID
lambda	the lambda parameter, a numeric value. For advanced usage, use the structure as returned by create_lambda_param
value	the initial value for the MCMC
lower	the lower bound, the lowest possible value
upper	an upper limit of the uniform distribution. If the upper limits needs to be infinity, set upper to Inf.

Value

a Poisson distribution

Author(s)

Richèl J.C. Bilderbeek

See Also

the function create_distr shows an overview of all supported distributions

Examples

if (is_on_ci()) {

  poisson_distr <- create_poisson_distr()

  beast2_input_file <- get_beautier_tempfilename()
  create_beast2_input_file(
    input_filename = get_fasta_filename(),
    beast2_input_file,
    tree_prior = create_yule_tree_prior(
      birth_rate_distr = poisson_distr
    )
  )
  file.remove(beast2_input_file)

  remove_beautier_folder()
}

beautier documentation built on Nov. 2, 2023, 5:08 p.m.