create_test_ns_inference_model: Create an inference model to be tested by Nested Sampling

In beautier: 'BEAUti' from R

Create an inference model to be tested by Nested Sampling

Description

Create an inference model to be tested by Nested Sampling

Usage

create_test_ns_inference_model(
  site_model = create_jc69_site_model(),
  clock_model = create_strict_clock_model(),
  tree_prior = create_yule_tree_prior(),
  mcmc = create_test_ns_mcmc()
)

Arguments

site_model	a site model, as returned by create_site_model
clock_model	a clock model, as returned by create_clock_model
tree_prior	a tree priors, as returned by create_tree_prior
mcmc	one MCMC. Use create_mcmc to create an MCMC. Use create_ns_mcmc to create an MCMC for a Nested Sampling run. Use check_mcmc to check if an MCMC is valid. Use rename_mcmc_filenames to rename the filenames in an MCMC.

Value

an inference model

Author(s)

Richèl J.C. Bilderbeek

See Also

Use create_test_inference_model to create a regular inference model with a short MCMC, to be used in testing. Use create_ns_inference_model to create an inference model to estimate the marginal likelihood.

Examples

check_empty_beautier_folder()

inference_model <- create_test_ns_inference_model()

check_empty_beautier_folder()

beautier documentation built on Nov. 2, 2023, 5:08 p.m.