create_ucld_mean_state_node_param_xml: Internal function

In beautier: 'BEAUti' from R

Internal function

Description

Creates the ucldMean.c parameter with the name stateNode, such as: <parameter id=\"ucldMean.c:[id]\" spec=\"parameter.RealParameter\" name=\"stateNode\">1.0</parameter>

Usage

create_ucld_mean_state_node_param_xml(inference_model)

Arguments

inference_model

a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.

Value

the XML <parameter id=\"ucldMean.c:[id]\" spec=\"parameter.RealParameter\" name=\"stateNode\">1.0</parameter>

Author(s)

Richèl J.C. Bilderbeek

Examples

check_empty_beautier_folder()

create_ucld_mean_state_node_param_xml(
  create_inference_model(
    clock_model = create_rln_clock_model(id = 314),
    beauti_options = create_beauti_options_v2_6()
  )
)

check_empty_beautier_folder()

beautier documentation built on Nov. 2, 2023, 5:08 p.m.