has_mrca_prior: Determines if the inference model has an MRCA prior.

In beautier: 'BEAUti' from R

Determines if the inference model has an MRCA prior.

Description

Will stop if the inference model is invalid

Usage

has_mrca_prior(inference_model)

Arguments

inference_model

a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.

Value

TRUE if the inference model has an MRCA prior, FALSE otherwise

Note

MRCA: 'Most Recent Common Ancestor'

Author(s)

Richèl J.C. Bilderbeek

See Also

• create_inference_model: create an inference model

• create_mrca_prior: create an MRCA prior

Examples

check_empty_beautier_folder()

# No MRCA prior
inference_model <- create_inference_model(
  mrca_prior = NA
)
has_mrca_prior(inference_model) # Returns FALSE

# A default MRCA prior
inference_model <- create_inference_model(
  mrca_prior = create_mrca_prior()
)
has_mrca_prior(inference_model) # Returns TRUE

check_empty_beautier_folder()

beautier documentation built on Nov. 2, 2023, 5:08 p.m.