has_rln_clock_model: Determine if the 'inference_model' uses a relaxed log-normal...

In beautier: 'BEAUti' from R

Determine if the inference_model uses a relaxed log-normal clock model.

Description

Determine if the inference_model uses a relaxed log-normal clock model.

Usage

has_rln_clock_model(inference_model)

Arguments

inference_model

a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.

Value

TRUE if the inference_model uses a relaxed log-normal clock model, FALSE otherwise

Author(s)

Richèl J.C. Bilderbeek

Examples

if (is_on_ci()) {
  check_empty_beautier_folder()

  # Yes, has a RLN clock model
  has_rln_clock_model(
    create_inference_model(clock_model = create_rln_clock_model())
  )

  # No RLN clock model
  has_rln_clock_model(
    create_inference_model(clock_model = create_strict_clock_model())
  )

  check_empty_beautier_folder()
}

beautier documentation built on Nov. 2, 2023, 5:08 p.m.