has_strict_clock_model: Determine if the 'inference_model' uses a strict clock model.

In beautier: 'BEAUti' from R

Determine if the inference_model uses a strict clock model.

Description

Determine if the inference_model uses a strict clock model

Usage

has_strict_clock_model(inference_model)

Arguments

inference_model

a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.

Value

TRUE if the inference_model uses a strict clock model, FALSE otherwise

Author(s)

Richèl J.C. Bilderbeek

Examples

check_empty_beautier_folder()

# Yes, has a strict clock model
has_strict_clock_model(
  create_inference_model(clock_model = create_strict_clock_model())
)

# No strict clock model
has_strict_clock_model(
  create_inference_model(clock_model = create_rln_clock_model())
)

check_empty_beautier_folder()

beautier documentation built on Nov. 2, 2023, 5:08 p.m.