is_mrca_align_id_in_fasta: Determine if an MRCA prior's alignment IDs is present in the...

View source: R/is_mrca_align_id_in_fasta.R

is_mrca_align_id_in_fastaR Documentation

Determine if an MRCA prior's alignment IDs is present in the FASTA file

Description

Determine if an MRCA prior's alignment IDs is present in the FASTA file

Usage

is_mrca_align_id_in_fasta(mrca_prior, fasta_filename)

Arguments

mrca_prior

a Most Recent Common Ancestor prior, as returned by create_mrca_prior

fasta_filename

a FASTA filename. Use get_fasta_filename to obtain a testing FASTA filename. Note that BEAST2 also supports missing data, by using a dash (-) or question mark (?) as a sequence.

Value

TRUE if the MRCA prior's alignment IDs is present in the FASTA file. Returns FALSE otherwise

Author(s)

Richèl J.C. Bilderbeek


beautier documentation built on Nov. 2, 2023, 5:08 p.m.