mrca_prior_to_xml_state: Internal function to create the XML of an MRCA prior, as used...

In beautier: 'BEAUti' from R

Internal function to create the XML of an MRCA prior, as used in the state section

Description

Internal function to create the XML of an MRCA prior, as used in the state section

Usage

mrca_prior_to_xml_state(inference_model)

Arguments

inference_model

a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.

Value

the tree prior as XML text

Author(s)

Richèl J.C. Bilderbeek

Examples

check_empty_beautier_folder()

mrca_prior_to_xml_state(
  inference_model = create_inference_model(
    mrca_prior = create_mrca_prior(
      alignment_id = "test_output_0",
      mrca_distr = create_normal_distr(id = 42)
    ),
    clock_model = create_strict_clock_model()
  )
)

check_empty_beautier_folder()

beautier documentation built on Nov. 2, 2023, 5:08 p.m.