strict_clock_model_to_xml_prior_distr: Internal function

In beautier: 'BEAUti' from R

Internal function

Description

Internal function to converts a strict clock model to the prior section of the XML as text

Usage

strict_clock_model_to_xml_prior_distr(inference_model)

Arguments

inference_model

a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.

Value

a character vector of XML strings

Author(s)

Richèl J.C. Bilderbeek

Examples

check_empty_beautier_folder()
 # <distribution id="posterior" spec="util.CompoundDistribution">
 #     <distribution id="prior" spec="util.CompoundDistribution">
 #       HERE, where the ID of the distribution is 'prior'
 #     </distribution>
 #     <distribution id="likelihood" ...>
 #     </distribution>
 # </distribution>
strict_clock_model_to_xml_prior_distr(
  inference_model = create_inference_model()
)
check_empty_beautier_folder()

beautier documentation built on Nov. 2, 2023, 5:08 p.m.