tree_model_to_tracelog_xml: Internal function

In beautier: 'BEAUti' from R

Internal function

Description

Creates the tree models' XML for the tracelog section. That is, all XML tags that have the word 'tree' in them.

Usage

tree_model_to_tracelog_xml(inference_model)

Arguments

inference_model

a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.

Value

lines of XML text

Note

use site_models just because it contains all IDs

Author(s)

Richèl J.C. Bilderbeek

See Also

the complete tracelog section is created by create_tracelog_xml

Examples

check_empty_beautier_folder()

# <logger id="tracelog" ...>
#'   # Here
# </logger>

check_empty_beautier_folder()

beautier documentation built on Nov. 2, 2023, 5:08 p.m.