ber: Batch Effects Removal

The functions in this package remove batch effects from microarrary normalized data. The expression levels of the genes are represented in a matrix where rows correspond to independent samples and columns to genes (variables). The batches are represented by categorical variables (objects of class factor). When further covariates of interest are available they can be used to remove efficiently the batch effects and adjust the data.

AuthorMarco Giordan
Date of publication2013-03-12 10:01:16
MaintainerMarco Giordan <marco.giordan@fmach.it>
LicenseGPL-2
Version4.0

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Files in this package

ber
ber/MD5
ber/DESCRIPTION
ber/NAMESPACE
ber/R
ber/R/ber.r
ber/R/ber_bg.r
ber/R/combat_np.r
ber/R/combat_p.r
ber/R/standardization.r
ber/R/mean_centering.r
ber/man
ber/man/mean_centering.Rd ber/man/ber_bg.Rd ber/man/combat_p.Rd ber/man/ber.Rd ber/man/combat_np.Rd ber/man/standardization.Rd

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