ber: Batch Effects Removal
Version 4.0

The functions in this package remove batch effects from microarrary normalized data. The expression levels of the genes are represented in a matrix where rows correspond to independent samples and columns to genes (variables). The batches are represented by categorical variables (objects of class factor). When further covariates of interest are available they can be used to remove efficiently the batch effects and adjust the data.

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AuthorMarco Giordan
Date of publication2013-03-12 10:01:16
MaintainerMarco Giordan <marco.giordan@fmach.it>
LicenseGPL-2
Version4.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ber")

Man pages

ber: Batch Effects Removal
ber_bg: Batch Effects Removal using Bagging
combat_np: non-parametric combat
combat_p: parametric combat
mean_centering: mean_centering
standardization: standardization

Functions

ber Man page Source code
ber_bg Man page Source code
combat_np Man page Source code
combat_p Man page Source code
mean_centering Man page Source code
standardization Man page Source code

Files

MD5
DESCRIPTION
NAMESPACE
R
R/ber.r
R/ber_bg.r
R/combat_np.r
R/combat_p.r
R/standardization.r
R/mean_centering.r
man
man/mean_centering.Rd
man/ber_bg.Rd
man/combat_p.Rd
man/ber.Rd
man/combat_np.Rd
man/standardization.Rd
ber documentation built on May 20, 2017, 3:17 a.m.