bibliospec: Reading Mass Spectrometric Search Results
Version 0.0.4

R class to access 'sqlite', 'BiblioSpec' generated, mass spectrometry search result files, containing detailed information about peptide spectra matches. Convert 'Mascot' '.dat' or e.g. 'comet' '.pep.xml' files with 'BiblioSpec' into 'sqlite' files and than access them with the 'CRAN' 'bibliospec' package to analyse with the R-packages 'specL' to generate spectra libraries, 'protViz' to annotate spectra, or 'prozor' for false discovery rate estimation and protein inference.

AuthorChristian Panse <cp@fgcz.ethz.ch>, Witold E. Wolski <wew@fgcz.ethz.ch>
Date of publication2016-07-01 10:57:25
MaintainerWitold E. Wolski <wew@fgcz.ethz.ch>
LicenseGPL-3
Version0.0.4
URL https://github.com/protViz/bibliospec
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("bibliospec")

Getting started

README.md

Popular man pages

Bibliospec-class: R access to Bibliospec File
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All man pages Function index File listing

Man pages

Bibliospec-class: R access to Bibliospec File

Functions

Bibliospec Man page
Bibliospec-class Man page
bibliospec Man page
blib Man page
blobs2Frame Source code
convertIntToNumeric Source code
convertMZToNumeric Source code
newPsm Source code
onAttach Source code

Files

inst
inst/graphics
inst/graphics/uml.png
inst/Dockerfile
inst/NEWS.Rd
inst/extdata
inst/extdata/peptideStd.sqlite
tests
tests/testthat.R
tests/testthat
tests/testthat/test-bibliospec.R
NAMESPACE
R
R/bibliospec.R
R/zzz.R
README.md
MD5
DESCRIPTION
man
man/Bibliospec-class.Rd
bibliospec documentation built on May 19, 2017, 4:36 p.m.

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