bibliospec: Reading Mass Spectrometric Search Results

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R class to access 'sqlite', 'BiblioSpec' generated, mass spectrometry search result files, containing detailed information about peptide spectra matches. Convert 'Mascot' '.dat' or e.g. 'comet' '.pep.xml' files with 'BiblioSpec' into 'sqlite' files and than access them with the 'CRAN' 'bibliospec' package to analyse with the R-packages 'specL' to generate spectra libraries, 'protViz' to annotate spectra, or 'prozor' for false discovery rate estimation and protein inference.

Author
Christian Panse <cp@fgcz.ethz.ch>, Witold E. Wolski <wew@fgcz.ethz.ch>
Date of publication
2016-07-01 10:57:25
Maintainer
Witold E. Wolski <wew@fgcz.ethz.ch>
License
GPL-3
Version
0.0.4
URLs

View on CRAN

Man pages

Bibliospec-class
R access to Bibliospec File

Files in this package

bibliospec
bibliospec/inst
bibliospec/inst/graphics
bibliospec/inst/graphics/uml.png
bibliospec/inst/Dockerfile
bibliospec/inst/NEWS.Rd
bibliospec/inst/extdata
bibliospec/inst/extdata/peptideStd.sqlite
bibliospec/tests
bibliospec/tests/testthat.R
bibliospec/tests/testthat
bibliospec/tests/testthat/test-bibliospec.R
bibliospec/NAMESPACE
bibliospec/R
bibliospec/R/bibliospec.R
bibliospec/R/zzz.R
bibliospec/README.md
bibliospec/MD5
bibliospec/DESCRIPTION
bibliospec/man
bibliospec/man/Bibliospec-class.Rd