bibliospec: Reading Mass Spectrometric Search Results

R class to access 'sqlite', 'BiblioSpec' generated, mass spectrometry search result files, containing detailed information about peptide spectra matches. Convert 'Mascot' '.dat' or e.g. 'comet' '.pep.xml' files with 'BiblioSpec' into 'sqlite' files and than access them with the 'CRAN' 'bibliospec' package to analyse with the R-packages 'specL' to generate spectra libraries, 'protViz' to annotate spectra, or 'prozor' for false discovery rate estimation and protein inference.

AuthorChristian Panse <cp@fgcz.ethz.ch>, Witold E. Wolski <wew@fgcz.ethz.ch>
Date of publication2016-07-01 10:57:25
MaintainerWitold E. Wolski <wew@fgcz.ethz.ch>
LicenseGPL-3
Version0.0.4
https://github.com/protViz/bibliospec

View on CRAN

Functions

bibliospec Man page
Bibliospec Man page
Bibliospec-class Man page
blib Man page

Files

bibliospec
bibliospec/inst
bibliospec/inst/graphics
bibliospec/inst/graphics/uml.png
bibliospec/inst/Dockerfile
bibliospec/inst/NEWS.Rd
bibliospec/inst/extdata
bibliospec/inst/extdata/peptideStd.sqlite
bibliospec/tests
bibliospec/tests/testthat.R
bibliospec/tests/testthat
bibliospec/tests/testthat/test-bibliospec.R
bibliospec/NAMESPACE
bibliospec/R
bibliospec/R/bibliospec.R bibliospec/R/zzz.R
bibliospec/README.md
bibliospec/MD5
bibliospec/DESCRIPTION
bibliospec/man
bibliospec/man/Bibliospec-class.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.