Files in bigPLScox

Partial Least Squares for Cox Models with Big Matrices

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/RcppExports.R R/internal-bigPLScox.R R/big_pls_cox_transform.R R/predict-big_pls_gd.R R/datasets.R R/coxDKgplsDR.R R/cv.coxsgpls.R R/coxsgpls.R R/predict.sPLS.R R/bigmatrix-operations.R R/bigPLScox-package.R R/cv.coxDKsgplsDR.R R/predict.gPLS.R R/bigSurvSGD.na.omit.R R/predict-cox-legacy.R R/cv.big_pls_cox.R R/dataCox.R R/big_pls_cox.R R/cv.coxDKspls_sgplsDR.R R/coxspls_sgplsDR.R R/computeDR.R R/coxDKspls_sgplsDR.R R/plot.big_pls_cox_gd.R R/cv.coxspls_sgplsDR.R R/coxDKsgplsDR.R R/spls.cox.R R/coxspls_sgpls.R R/cv.coxDKgplsDR.R R/cv.coxspls_sgpls.R R/predict.pls.cox.R R/summary-big_pls_cox.R R/deviance_residuals.R R/cv.coxgplsDR.R R/coxsgplsDR.R R/cv.coxsgplsDR.R R/predict.sgPLS.R R/cv.coxgpls.R R/align_bigpls_cox.R R/predict-big_pls.R R/pls.cox.R R/plot-big_pls_cox.R R/coxgplsDR.R R/big_pls_cox_gd.R R/select_components.R R/coxgpls.R R/bigscale.R R/big_fast.R R/big_pls_cox_gd_diagnostics.R

src/Makevars

src/RcppExports.cpp

src/fast_common.h

src/big_pls_cox_fast_dense.cpp

src/big_pls_cox.cpp

src/big_pls_cox_gd.cpp

src/partial_loglik.cpp

src/big_pls_cox_fast_big.cpp

src/cox_score_residuals_fast.cpp

src/deviance_residuals.cpp

src/big_pls_cox_transform.cpp

inst/_pkgdown.yml

inst/CITATION

inst/doc/bigPLScox-benchmarking.R inst/doc/getting-started.R inst/doc/bigPLScox.R inst/doc/bigPLScox-benchmarking.Rmd

inst/doc/bigPLScox.html

inst/doc/bigPLScox-benchmarking.html

inst/doc/getting-started.html

inst/doc/getting-started.Rmd inst/doc/bigPLScox.Rmd inst/benchmarks/cox-benchmark.R inst/benchmarks/benchmark_bigPLScox.R inst/benchmarks/cox_pls_benchmark.R

inst/benchmarks/results/cox-benchmark-20251115-170850.csv

inst/benchmarks/results/cox_pls-benchmark-dense-20251115-170918.csv

inst/benchmarks/results/cox_pls-benchmark-bigmemory-20251115-170918.csv

inst/benchmarks/results/benchmark_bigPLScox-20251115-171009.csv

build/vignette.rds

tests/testthat.R tests/testthat/test-gd-optimizers.R tests/testthat/test-gd-diagnostics.R tests/testthat/test-big_pls_cox.R tests/testthat/test-deviance-residuals.R tests/testthat/test-big_pls_cox_gd.R tests/testthat/test-big-features.R vignettes/bigPLScox-benchmarking.Rmd vignettes/getting-started.Rmd vignettes/bigPLScox.Rmd

data/dCox_sim.RData

data/sim_data.RData

data/micro.censure.RData

data/Xmicro.censure_compl_imp.RData

man/cv.coxsgplsDR.Rd man/cv.coxDKgplsDR.Rd man/coxspls_sgpls.Rd man/print.big_pls_cox_gd.Rd man/predict_cox_pls.Rd man/coxgpls.Rd man/coxsgpls.Rd man/cv.coxspls_sgplsDR.Rd man/big_pls_cox.Rd man/print.summary.big_pls_cox_fast.Rd man/cox_deviance_residuals.Rd man/cv.coxsgpls.Rd man/summary.big_pls_cox.Rd man/coxsgplsDR.Rd man/component_information.Rd man/micro.censure.Rd man/cv.coxgplsDR.Rd man/coxgplsDR.Rd man/bigSurvSGD.na.omit.Rd man/cv.coxDKsgplsDR.Rd man/predict_pls_latent.Rd man/big_pls_cox_transform.Rd man/bigmatrix-operations.Rd man/coxDKspls_sgplsDR.Rd man/predict.big_pls_cox_gd.Rd man/cv.coxgpls.Rd man/align_big_plscox.Rd man/computeDR.Rd man/big_pls_cox_fast.Rd man/coxDKgplsDR.Rd man/plot.big_pls_cox.Rd man/internal-bigPLScox.Rd man/predict.big_pls_cox.Rd man/predict.big_pls_cox_fast.Rd man/summary.big_pls_cox_gd.Rd man/cv.coxDKspls_sgplsDR.Rd man/Xmicro.censure_compl_imp.Rd man/coxDKsgplsDR.Rd man/cv.big_pls_cox.Rd man/summary.big_pls_cox_fast.Rd man/bigPLScox-package.Rd man/bigscale.Rd man/print.big_pls_cox.Rd man/big_pls_cox_gd.Rd man/coxspls_sgplsDR.Rd man/dataCox.Rd man/cv.coxspls_sgpls.Rd man/gd_diagnostics.Rd man/partialbigSurvSGDv0.Rd man/dCox_sim.Rd man/sim_data.Rd man/plot.big_pls_cox_gd.Rd

bigPLScox documentation built on Nov. 18, 2025, 5:06 p.m.