Man pages for bigPLScox
Partial Least Squares for Cox Models with Big Matrices
| align_big_plscox | Align a GD fit to a PLS fit (optional refit) |
| bigmatrix-operations | Matrix and arithmetic operations for big.matrix objects |
| big_pls_cox | Partial Least Squares Components for Cox Models with Big... |
| big_pls_cox_fast | Partial Least Squares Components for Cox Models (fast... |
| big_pls_cox_gd | Gradient based PLS Cox for big matrices |
| bigPLScox-package | bigPLScox-package |
| big_pls_cox_transform | Transform new data to PLS–Cox scores |
| bigscale | Construct Scaled Design Matrices for Big Survival Models |
| bigSurvSGD.na.omit | Fit Survival Models with Stochastic Gradient Descent |
| component_information | Information criteria for component selection |
| computeDR | Compute deviance residuals |
| cox_deviance_residuals | Cox deviance residuals via C++ backends |
| coxDKgplsDR | Fitting a Direct Kernel group PLS model on the (Deviance)... |
| coxDKsgplsDR | Fitting a Direct Kernel group sparse PLS model on the... |
| coxDKspls_sgplsDR | Fitting a Cox-Model on sparse PLSR components using the... |
| coxgpls | Fitting a Cox-Model on group PLSR components |
| coxgplsDR | Fitting a Cox-Model on group PLSR components using the... |
| coxsgpls | Fitting a Cox-Model on group sparse PLSR components |
| coxsgplsDR | Fitting a Cox-Model on group sparse PLSR components using the... |
| coxspls_sgpls | Fitting a Cox-Model on sparse PLSR components |
| coxspls_sgplsDR | Fitting a Cox-Model on sparse PLSR components using the... |
| cv.big_pls_cox | Cross-validation for big-memory PLS-Cox models |
| cv.coxDKgplsDR | Cross-validating a Direct Kernel group PLS model fitted on... |
| cv.coxDKsgplsDR | Cross-validating a Direct Kernel group sparse PLS model... |
| cv.coxDKspls_sgplsDR | Cross-validating a Direct Kernel sparse PLS model fitted on... |
| cv.coxgpls | Cross-validating a Cox-Model fitted on group PLSR components |
| cv.coxgplsDR | Cross-validating a Cox-Model fitted on group PLSR components... |
| cv.coxsgpls | Cross-validating a Cox-Model fitted on sparse group PLSR... |
| cv.coxsgplsDR | Cross-validating a Cox-Model fitted on sparse group PLSR... |
| cv.coxspls_sgpls | Cross-validating a Cox-Model fitted on sparse PLSR components |
| cv.coxspls_sgplsDR | Cross-validating a Cox-Model fitted on sparse PLSR components... |
| dataCox | Cox Proportional Hazards Model Data Generation From Weibull... |
| dCox_sim | Simulated survival dataset for Cox models |
| gd_diagnostics | Extract Diagnostics from a big_pls_cox_gd Model |
| internal-bigPLScox | Internal bigPLScox functions |
| micro.censure | Microsat features and survival times |
| partialbigSurvSGDv0 | Incremental Survival Model Fitting with Pre-Scaled Data |
| plot.big_pls_cox | Plot method for big_pls_cox objects |
| plot.big_pls_cox_gd | Plot method for big_pls_cox_gd objects |
| predict.big_pls_cox | Predict method for big-memory PLS-Cox models |
| predict.big_pls_cox_fast | Predictions for fast big PLS–Cox fits |
| predict.big_pls_cox_gd | Predict method for big_pls_cox_gd |
| predict_cox_pls | Predict survival summaries from legacy Cox-PLS fits |
| predict_pls_latent | Predict responses and latent scores from PLS fits |
| print.big_pls_cox | Print method for big_pls_cox objects |
| print.big_pls_cox_gd | Print method for big_pls_cox_gd objects |
| print.summary.big_pls_cox_fast | Print method for summary.big_pls_cox_fast objects |
| sim_data | Simulated dataset |
| summary.big_pls_cox | Summary for big_pls_cox objects |
| summary.big_pls_cox_fast | Summary for big_pls_cox objects |
| summary.big_pls_cox_gd | Summary for big_pls_cox_gd objects |
| Xmicro.censure_compl_imp | Imputed Microsat features |
