sequence: Simulated human DNA variant sequence

In bigQF: Quadratic Forms in Large Matrices

Description

A matrix with number of copies of the minor allele for 4028 variants on 5000 people, simulated using the Markov Coalescent Simulator of Chen and coworkers.

Usage

data("sequence")

Format

The format is: num [1:5000, 1:4028] 0 0 0 0 0 0 0 0 0 0 ...

Source

https://github.com/gchen98/macs

References

Gary K Chen, Paul Marjoram, and Jeffrey D. Wall (2009) Fast and flexible simulation of DNA sequence data Genome Research 19:136-142. http://genome.cshlp.org/content/19/1/136

Examples

data(sequence)
summary(colMeans(sequence))

bigQF documentation built on Nov. 23, 2021, 5:06 p.m.