binGroup: Evaluation and experimental design for binomial group testing

This package provides methods for estimation and hypothesis testing of proportions in group testing designs. It involves methods for estimating a proportion in a single population (assuming sensitivity and specificity 1 in designs with equal group sizes), as well as hypothesis tests and functions for experimental design for this situation. For estimating one proportion or the difference of proportions, a number of confidence interval methods are included, which can deal with various different pool sizes. Further, regression methods are implemented for simple pooling and matrix pooling designs.

Author
Boan Zhang, Christopher Bilder, Brad Biggerstaff, Frank Schaarschmidt
Date of publication
2012-08-14 13:01:31
Maintainer
Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>
License
GPL
Version
1.1-0

View on CRAN

Man pages

bgtCI
Confidence Intervals for One Proportion in Binomial Group...
bgtPower
Power to Reject a Hypothesis in Binomial Group Testing for...
bgtTest
Hypothesis Test for One Proportion in Binomial Group Testing
bgtvs
Confidence Interval for One Proportion in Group Testing with...
bgtWidth
Expected Width of Confidence Intervals in Binomial Group...
binCI
Confidence Intervals for One Binomial Proportion
binDesign
Sample Size Iteration for One Parameter Binomial Problem
binGroup-package
Statistical Methods for Group Testing.
binPower
Power Calculation for One Parameter Binomial Problem
binTest
Hypothesis tests for One Binomial Proportion
binWidth
Expected Confidence Interval Width for One Binomial...
estDesign
Sample Size Iteration Depending on Minimal MSE in...
gt.control
Auxiliary for Controlling Group Testing Regression
gtreg
Fitting Group Testing Models
gtreg.halving
Fitting Group Testing Models Under the Halving Protocol
gtreg.mp
Fitting Group Testing Models in Matrix Pooling Setting
hivsurv
Data from an HIV surveillance project
nDesign
Iterate Sample Size in One Parameter Group Testing
plot.bgtDesign
Plot Results of nDesign or sDesign
plot.binDesign
Plot Results of binDesign
pooledBin
Confidence intervals for a single proportion
pooledBinDiff
Confidence intervals for the difference of proportions
predict.gt
Predict Method for Group Testing Model Fits
print.bgt
Print Functions for Group Testing CIs and Tests for One...
print.bgtDesign
Print Functions for nDesign and sDesign
print.binDesign
Print Function for binDesign
print.gt
Print methods for objects of classes "gt" and "gt.mp"
print.poolbindiff
Print methods for classes "poolbin" and "poolbindiff"
print.summary.gt.mp
Print Functions for summary.gt.mp and summary.gt
residuals.gt
Extract Model Residuals From a Fitted Group Testing Model
sDesign
Iterate Group Size for a One-Parameter Group Testing Problem
sim.gt
Simulation Function for Group Testing Data
sim.halving
Simulation Function for Group Testing Data for the Halving...
sim.mp
Simulation Function for Group Testing Data with Matrix...
summary.gt
Summary Method for Group Testing Model (Simple Pooling) Fits
summary.gt.mp
Summary Method for Group Testing Model (Matrix Pooling) Fits
summary.poolbindiff
Summary methods for "poolbin" and "poolbindiff"

Files in this package

binGroup
binGroup/MD5
binGroup/R
binGroup/R/summary.poolbindiff.R
binGroup/R/summary.poolbin.R
binGroup/R/sDesign.R
binGroup/R/print.sDesign.R
binGroup/R/print.poolbindiff.R
binGroup/R/print.poolbin.R
binGroup/R/print.nDesign.R
binGroup/R/print.binDesign.R
binGroup/R/print.bgtTest.R
binGroup/R/print.bgtCI.R
binGroup/R/pooledBinMisc.R
binGroup/R/pooledBinDiff.R
binGroup/R/pooledBin.R
binGroup/R/plot.sDesign.R
binGroup/R/plot.nDesign.R
binGroup/R/plot.binDesign.R
binGroup/R/nDesign.R
binGroup/R/msep.R
binGroup/R/estDesign.R
binGroup/R/binWidth.R
binGroup/R/binTest.R
binGroup/R/binPower.R
binGroup/R/binGroupReg.r
binGroup/R/binGroup-internal.R
binGroup/R/binDesign.R
binGroup/R/binCI.R
binGroup/R/bgtWidth.R
binGroup/R/bgtvs.R
binGroup/R/bgtTest.R
binGroup/R/bgtPower.R
binGroup/R/bgtCI.R
binGroup/NAMESPACE
binGroup/man
binGroup/man/summary.poolbindiff.Rd
binGroup/man/summary.gt.Rd
binGroup/man/summary.gt.mp.Rd
binGroup/man/sim.mp.Rd
binGroup/man/sim.halving.Rd
binGroup/man/sim.gt.Rd
binGroup/man/sDesign.Rd
binGroup/man/residuals.gt.Rd
binGroup/man/print.summary.gt.mp.Rd
binGroup/man/print.poolbindiff.Rd
binGroup/man/print.gt.Rd
binGroup/man/print.binDesign.Rd
binGroup/man/print.bgtDesign.Rd
binGroup/man/print.bgt.Rd
binGroup/man/predict.gt.Rd
binGroup/man/pooledBinDiff.Rd
binGroup/man/pooledBin.Rd
binGroup/man/plot.binDesign.Rd
binGroup/man/plot.bgtDesign.Rd
binGroup/man/nDesign.Rd
binGroup/man/hivsurv.Rd
binGroup/man/gtreg.Rd
binGroup/man/gtreg.mp.Rd
binGroup/man/gtreg.halving.Rd
binGroup/man/gt.control.Rd
binGroup/man/estDesign.Rd
binGroup/man/binWidth.Rd
binGroup/man/binTest.Rd
binGroup/man/binPower.Rd
binGroup/man/binGroup-package.Rd
binGroup/man/binDesign.Rd
binGroup/man/binCI.Rd
binGroup/man/bgtWidth.Rd
binGroup/man/bgtvs.Rd
binGroup/man/bgtTest.Rd
binGroup/man/bgtPower.Rd
binGroup/man/bgtCI.Rd
binGroup/DESCRIPTION
binGroup/data
binGroup/data/hivsurv.rda