binGroup: Evaluation and experimental design for binomial group testing

This package provides methods for estimation and hypothesis testing of proportions in group testing designs. It involves methods for estimating a proportion in a single population (assuming sensitivity and specificity 1 in designs with equal group sizes), as well as hypothesis tests and functions for experimental design for this situation. For estimating one proportion or the difference of proportions, a number of confidence interval methods are included, which can deal with various different pool sizes. Further, regression methods are implemented for simple pooling and matrix pooling designs.

AuthorBoan Zhang, Christopher Bilder, Brad Biggerstaff, Frank Schaarschmidt
Date of publication2012-08-14 13:01:31
MaintainerFrank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>
LicenseGPL
Version1.1-0

View on CRAN

Man pages

bgtCI: Confidence Intervals for One Proportion in Binomial Group...

bgtPower: Power to Reject a Hypothesis in Binomial Group Testing for...

bgtTest: Hypothesis Test for One Proportion in Binomial Group Testing

bgtvs: Confidence Interval for One Proportion in Group Testing with...

bgtWidth: Expected Width of Confidence Intervals in Binomial Group...

binCI: Confidence Intervals for One Binomial Proportion

binDesign: Sample Size Iteration for One Parameter Binomial Problem

binGroup-package: Statistical Methods for Group Testing.

binPower: Power Calculation for One Parameter Binomial Problem

binTest: Hypothesis tests for One Binomial Proportion

binWidth: Expected Confidence Interval Width for One Binomial...

estDesign: Sample Size Iteration Depending on Minimal MSE in...

gt.control: Auxiliary for Controlling Group Testing Regression

gtreg: Fitting Group Testing Models

gtreg.halving: Fitting Group Testing Models Under the Halving Protocol

gtreg.mp: Fitting Group Testing Models in Matrix Pooling Setting

hivsurv: Data from an HIV surveillance project

nDesign: Iterate Sample Size in One Parameter Group Testing

plot.bgtDesign: Plot Results of nDesign or sDesign

plot.binDesign: Plot Results of binDesign

pooledBin: Confidence intervals for a single proportion

pooledBinDiff: Confidence intervals for the difference of proportions

predict.gt: Predict Method for Group Testing Model Fits

print.bgt: Print Functions for Group Testing CIs and Tests for One...

print.bgtDesign: Print Functions for nDesign and sDesign

print.binDesign: Print Function for binDesign

print.gt: Print methods for objects of classes "gt" and "gt.mp"

print.poolbindiff: Print methods for classes "poolbin" and "poolbindiff"

print.summary.gt.mp: Print Functions for summary.gt.mp and summary.gt

residuals.gt: Extract Model Residuals From a Fitted Group Testing Model

sDesign: Iterate Group Size for a One-Parameter Group Testing Problem

sim.gt: Simulation Function for Group Testing Data

sim.halving: Simulation Function for Group Testing Data for the Halving...

sim.mp: Simulation Function for Group Testing Data with Matrix...

summary.gt: Summary Method for Group Testing Model (Simple Pooling) Fits

summary.gt.mp: Summary Method for Group Testing Model (Matrix Pooling) Fits

summary.poolbindiff: Summary methods for "poolbin" and "poolbindiff"

Functions

bgtAC Man page
bgtBlaker Man page
bgtCI Man page
bgtCP Man page
bgtPower Man page
bgtPowerI Man page
bgtSOC Man page
bgtTest Man page
bgtvs Man page
bgtWald Man page
bgtWidth Man page
bgtWidthI Man page
bgtWilson Man page
binAC Man page
binBlaker Man page
binCI Man page
binCP Man page
binDesign Man page
binGroup Man page
binGroup-package Man page
binPower Man page
binPowerI Man page
binSOC Man page
binTest Man page
binWald Man page
binWidth Man page
binWilson Man page
EM Man page
EM.halving Man page
EM.mp Man page
EM.ret Man page
estDesign Man page
gt.control Man page
gtreg Man page
gtreg.fit Man page
gtreg.halving Man page
gtreg.mp Man page
hivsurv Man page
msep Man page
nDesign Man page
plot.binDesign Man page
plot.nDesign Man page
plot.sDesign Man page
pooledBin Man page
pooledBinDiff Man page
predict.gt Man page
print.bgtCI Man page
print.bgtTest Man page
print.bgtvs Man page
print.binCI Man page
print.binDesign Man page
print.binTest Man page
print.gt Man page
print.nDesign Man page
print.poolbin Man page
print.poolbindiff Man page
print.sDesign Man page
print.summary.gt Man page
print.summary.gt.mp Man page
residuals.gt Man page
sDesign Man page
sim.gt Man page
sim.halving Man page
sim.mp Man page
summary.gt Man page
summary.gt.mp Man page
summary.poolbin Man page
summary.poolbindiff Man page

Files

binGroup
binGroup/MD5
binGroup/R
binGroup/R/summary.poolbindiff.R binGroup/R/summary.poolbin.R binGroup/R/sDesign.R binGroup/R/print.sDesign.R binGroup/R/print.poolbindiff.R binGroup/R/print.poolbin.R binGroup/R/print.nDesign.R binGroup/R/print.binDesign.R binGroup/R/print.bgtTest.R binGroup/R/print.bgtCI.R binGroup/R/pooledBinMisc.R binGroup/R/pooledBinDiff.R binGroup/R/pooledBin.R binGroup/R/plot.sDesign.R binGroup/R/plot.nDesign.R binGroup/R/plot.binDesign.R binGroup/R/nDesign.R binGroup/R/msep.R binGroup/R/estDesign.R binGroup/R/binWidth.R binGroup/R/binTest.R binGroup/R/binPower.R
binGroup/R/binGroupReg.r
binGroup/R/binGroup-internal.R binGroup/R/binDesign.R binGroup/R/binCI.R binGroup/R/bgtWidth.R binGroup/R/bgtvs.R binGroup/R/bgtTest.R binGroup/R/bgtPower.R binGroup/R/bgtCI.R
binGroup/NAMESPACE
binGroup/man
binGroup/man/summary.poolbindiff.Rd binGroup/man/summary.gt.Rd binGroup/man/summary.gt.mp.Rd binGroup/man/sim.mp.Rd binGroup/man/sim.halving.Rd binGroup/man/sim.gt.Rd binGroup/man/sDesign.Rd binGroup/man/residuals.gt.Rd binGroup/man/print.summary.gt.mp.Rd binGroup/man/print.poolbindiff.Rd binGroup/man/print.gt.Rd binGroup/man/print.binDesign.Rd binGroup/man/print.bgtDesign.Rd binGroup/man/print.bgt.Rd binGroup/man/predict.gt.Rd binGroup/man/pooledBinDiff.Rd binGroup/man/pooledBin.Rd binGroup/man/plot.binDesign.Rd binGroup/man/plot.bgtDesign.Rd binGroup/man/nDesign.Rd binGroup/man/hivsurv.Rd binGroup/man/gtreg.Rd binGroup/man/gtreg.mp.Rd binGroup/man/gtreg.halving.Rd binGroup/man/gt.control.Rd binGroup/man/estDesign.Rd binGroup/man/binWidth.Rd binGroup/man/binTest.Rd binGroup/man/binPower.Rd binGroup/man/binGroup-package.Rd binGroup/man/binDesign.Rd binGroup/man/binCI.Rd binGroup/man/bgtWidth.Rd binGroup/man/bgtvs.Rd binGroup/man/bgtTest.Rd binGroup/man/bgtPower.Rd binGroup/man/bgtCI.Rd
binGroup/DESCRIPTION
binGroup/data
binGroup/data/hivsurv.rda

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