bingat: Binary Graph Analysis Tools

Tools to analyze binary graph objects.

Author
Terrence Brooks, Berkley Shands, Skye Buckner-Petty, Patricio S. La Rosa, Elena Deych, William D. Shannon
Date of publication
2016-01-15 22:34:06
Maintainer
Berkley Shands <rpackages@biorankings.com>
License
Apache License (== 2.0)
Version
1.2.2

View on CRAN

Man pages

BinGAT-internal
Internal Functions
BinGAT-package
Binary Graph Analysis Tools
braingraphs
Brain Graph Data Set
calcDistance
Calculate the Distance Between Vectors
estGStar
Estimate G-Star
estLogLik
Estimate the Log Likelihood Value
estMLE
Estimate the MLE Parameters
estTau
Estimate Tau
gaConsensus
Genetic Algorithm Consensus Solution
getGibbsMixture
Group Splitter
getLoglikeMixture
Group Finder
getNumEdges
Get the Number of Edges in a Graph
getNumNodes
Get the Number of Nodes in a Graph
glrtPvalue
GLRT Regression Results
graphNetworkPlot
Graph Network Plots
lrtPvalue
Likelihood Ratio Test
pairedPvalue
P-Value for Paired Data Results
plotHeatmap
Plot Heat Map
plotMDS
Plot MDS
rGibbs
Generate Random Data
testGoF
Test the Goodness of Fit

Files in this package

bingat
bingat/NAMESPACE
bingat/NEWS
bingat/data
bingat/data/braingraphs.rda
bingat/R
bingat/R/glmReg.R
bingat/R/getLoglikeMixture.R
bingat/R/plotMDS.R
bingat/R/plotHeatmap.R
bingat/R/estMLE.R
bingat/R/gaConsensus.R
bingat/R/lrtPvalue.R
bingat/R/estTau.R
bingat/R/full2lt.R
bingat/R/glrtPvalue.R
bingat/R/rGibbs.R
bingat/R/estLogLik.R
bingat/R/testGoF.R
bingat/R/pairedPvalue.R
bingat/R/graphNetworkPlot.R
bingat/R/array2mat.R
bingat/R/vec2mat.R
bingat/R/getNumEdges.R
bingat/R/getNumNodes.R
bingat/R/list2mat.R
bingat/R/estGStar.R
bingat/R/getGibbsMixture.R
bingat/R/glrtReg.R
bingat/R/lt2full.R
bingat/R/calcDistance.R
bingat/MD5
bingat/DESCRIPTION
bingat/man
bingat/man/getNumNodes.Rd
bingat/man/BinGAT-internal.Rd
bingat/man/graphNetworkPlot.Rd
bingat/man/testGoF.Rd
bingat/man/estTau.Rd
bingat/man/getGibbsMixture.Rd
bingat/man/getNumEdges.Rd
bingat/man/estLogLik.Rd
bingat/man/plotMDS.Rd
bingat/man/gaConsensus.Rd
bingat/man/lrtPvalue.Rd
bingat/man/glrtPvalue.Rd
bingat/man/plotHeatmap.Rd
bingat/man/BinGAT-package.Rd
bingat/man/pairedPvalue.Rd
bingat/man/rGibbs.Rd
bingat/man/braingraphs.Rd
bingat/man/calcDistance.Rd
bingat/man/getLoglikeMixture.Rd
bingat/man/estMLE.Rd
bingat/man/estGStar.Rd