compose_extension_v1.4.2 | R Documentation |
Compose BioCompute Object - Extension Domain (v1.4.2)
compose_extension_v1.4.2(fhir = NULL, scm = NULL) compose_extension(fhir = NULL, scm = NULL)
fhir |
FHIR extension domain composed by |
scm |
SCM extension domain composed by |
A list of class bco.domain
fhir_endpoint <- "https://fhirtest.uhn.ca/baseDstu3" fhir_version <- "3" fhir_resources <- data.frame( "id" = c("21376", "6288583", "25544", "92440", "4588936"), "resource" = c( "Sequence", "DiagnosticReport", "ProcedureRequest", "Observation", "FamilyMemberHistory" ), stringsAsFactors = FALSE ) fhir <- compose_fhir(fhir_endpoint, fhir_version, fhir_resources) scm_repository <- "https://github.com/example/repo" scm_type <- "git" scm_commit <- "c9ffea0b60fa3bcf8e138af7c99ca141a6b8fb21" scm_path <- "workflow/hive-viral-mutation-detection.cwl" scm_preview <- "https://github.com/example/repo/blob/master/mutation-detection.cwl" scm <- compose_scm(scm_repository, scm_type, scm_commit, scm_path, scm_preview) compose_extension(fhir, scm) %>% convert_json()
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