compose_scm: Compose BioCompute Object - SCM Extension (v1.4.2)

In biocompute: Create and Manipulate BioCompute Objects

Compose BioCompute Object - SCM Extension (v1.4.2)

Description

Compose BioCompute Object - SCM Extension (v1.4.2)

Usage

compose_scm_v1.4.2(
  scm_repository = NULL,
  scm_type = c("git", "svn", "hg", "other"),
  scm_commit = NULL,
  scm_path = NULL,
  scm_preview = NULL
)

compose_scm(
  scm_repository = NULL,
  scm_type = c("git", "svn", "hg", "other"),
  scm_commit = NULL,
  scm_path = NULL,
  scm_preview = NULL
)

Arguments

scm_repository	Character string. Base URL of the SCM repository.
scm_type	Character string. Type of SCM database. Must be one of "git", "svn", "hg", or "other".
scm_commit	Character string. Revision within the SCM repository. Should be a repository-wide commit identifier or name of a tag, but may be a name of a branch.
scm_path	Character string. Path from the repository to the source code referenced. Should not start with /.
scm_preview	Character string. The full URI for the source code referenced by the BioCompute Object.

Value

A list of class bco.domain

Examples

scm_repository <- "https://github.com/example/repo"
scm_type <- "git"
scm_commit <- "c9ffea0b60fa3bcf8e138af7c99ca141a6b8fb21"
scm_path <- "workflow/hive-viral-mutation-detection.cwl"
scm_preview <- "https://github.com/example/repo/blob/master/mutation-detection.cwl"

compose_scm(scm_repository, scm_type, scm_commit, scm_path, scm_preview) %>% convert_json()

biocompute documentation built on May 3, 2022, 9:08 a.m.