biofiles: _biofiles_ is an R package for interfacing with GenBank or...

In biofiles: An Interface for GenBank/GenPept Flat Files

Description

This is an R package for interfacing with GenBank, GenPept, Embl and IMGT/HLA flat file records. It includes utilities for reading and writing GenBank files, and methods for interacting with annotation and sequence data.

Author(s)

Gerhard Sch<c3><b6>fl [e-mail]

References

For a sample GenBank record see https://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html

For a detailed description of the GenBank feature table format see https://www.ncbi.nlm.nih.gov/collab/FT

For a description of the EMBL flat file format see ftp://ftp.ebi.ac.uk/pub/databases/embl/doc/usrman.txt.

For a description of the format and conventions of IMGT/HLA flat files see https://www.ebi.ac.uk/ipd/imgt/hla/docs/manual.html.

biofiles documentation built on May 2, 2019, 3:31 p.m.