Description Arguments Methods Fields Extends Note Examples
Generator object for the "gbLocus"
reference class
Generates an object representing a GenBank LOCUS line.
... |
List of arguments (see NOTE) |
#new(lnm, len, mtp, div, top, mdt, cdt)
:Create a new gbLocus
object
#to_string()
:Create a string representation of a GenBank LOCUS field.
lnm
:Locus name. Usually the accession number.
len
: Sequence length; In bp or aa, depending on mtp
.
mtp
:Molecule type; NA, DNA, RNA, tRNA (transfer RNA), rRNA (ribosomal RNA), mRNA (messenger RNA), uRNA (small nuclear RNA), or AA (protein sequence). RNAs can be prefixes ss- (single-stranded), ds- (double-stranded), or ms- (mixed-stranded)
div
:Genbank division.
top
: Topology; linear, circular, or missing (NA
).
mdt
:Modification date.
cdt
:Create date.
All reference classes extend and inherit methods from
"envRefClass"
.
Arguments to the #new
method must be named arguments:
lnm Locus name; stored in the lnm
field.
len Sequence lenght; stored in the len
field.
mtp Molecule type; stored in the mtp
field).
div Genbank division; stored in the div
field.
top Topology; stored in the top
field.
mdt Modification date; stored in the mdt
field.
cdt Create date; stored in the cdt
field.
1 | showClass("gbLocus")
|
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