Man pages for bioregion
Comparison of Bioregionalisation Methods
| betapart_to_bioregion | Convert betapart dissimilarity to bioregion dissimilarity |
| bioregionalization_metrics | Calculate metrics for one or several bioregionalizations |
| bioregion_metrics | Calculate contribution metrics for bioregions |
| compare_bioregionalizations | Compare cluster memberships among multiple... |
| cut_tree | Cut a hierarchical tree |
| dissimilarity | Compute dissimilarity metrics (beta-diversity) between sites... |
| dissimilarity_to_similarity | Convert dissimilarity metrics to similarity metrics |
| find_optimal_n | Search for an optimal number of clusters in a list of... |
| fishdf | Spatial distribution of fish in Europe (data.frame) |
| fishmat | Spatial distribution of fish in Europe (co-occurrence matrix) |
| fishsf | Spatial distribution of fish in Europe |
| hclu_diana | Divisive hierarchical clustering based on dissimilarity or... |
| hclu_hierarclust | Hierarchical clustering based on dissimilarity or... |
| hclu_optics | OPTICS hierarchical clustering algorithm |
| install_binaries | Download, unzip, check permissions, and test the bioregion's... |
| map_bioregions | Create a map of bioregions |
| mat_to_net | Create a data.frame from a contingency table |
| netclu_beckett | Community structure detection in weighted bipartite networks... |
| netclu_greedy | Community structure detection via greedy optimization of... |
| netclu_infomap | Infomap community finding |
| netclu_labelprop | Finding communities based on propagating labels |
| netclu_leadingeigen | Finding communities based on the leading eigenvector of the... |
| netclu_leiden | Finding communities using the Leiden algorithm |
| netclu_louvain | Louvain community finding |
| netclu_oslom | OSLOM community finding |
| netclu_walktrap | Community structure detection via short random walks |
| net_to_mat | Create a contingency table from a data.frame |
| nhclu_affprop | Non-hierarchical clustering: Affinity Propagation |
| nhclu_clara | Non-hierarchical clustering: CLARA |
| nhclu_clarans | Non-hierarchical clustering: CLARANS |
| nhclu_dbscan | Non-hierarchical clustering: DBSCAN |
| nhclu_kmeans | Non-hierarchical clustering: K-means analysis |
| nhclu_pam | Non-hierarchical clustering: Partitioning Around Medoids |
| similarity | Compute similarity metrics between sites based on species... |
| similarity_to_dissimilarity | Convert similarity metrics to dissimilarity metrics |
| site_species_metrics | Calculate contribution metrics of sites and species |
| site_species_subset | Extract a subset of sites or species from a... |
| vegedf | Spatial distribution of Mediterranean vegetation (data.frame) |
| vegemat | Spatial distribution of Mediterranean vegetation... |
| vegesf | Spatial distribution of Mediterranean vegetation (spatial... |
