API for bioregion
Comparison of Bioregionalization Methods
| Global functions | |
|---|---|
| .summarize_metrics_df | Source code |
| `[.bioregion.pairwise` | Source code |
| abc | Source code |
| as.dist.bioregion.pairwise | Source code |
| as_bioregion_pairwise | Man page Source code |
| betapart_to_bioregion | Man page Source code |
| bind_pairwise | Man page Source code |
| bioregion_colors | Man page Source code |
| bioregion_metrics | Man page Source code |
| bioregionalization_metrics | Man page Source code |
| compare_bioregionalizations | Man page Source code |
| controls | Source code |
| convert_metric_names | Source code |
| cut_tree | Man page Source code |
| detect_data_type_from_metric | Source code |
| display_hierarchy | Source code |
| dissimilarity | Man page Source code |
| dissimilarity_to_similarity | Man page Source code |
| divide_sites | Source code |
| division_height | Source code |
| elbow_finder | Source code |
| exportGDF | Man page Source code |
| find_optimal_n | Man page Source code |
| fishdf | Man page |
| fishmat | Man page |
| fishsf | Man page |
| fresh_trees | Source code |
| gb | Source code |
| get_confusion_matrix | Source code |
| get_pairwise_membership | Source code |
| hclu_diana | Man page Source code |
| hclu_hierarclust | Man page Source code |
| hclu_optics | Man page Source code |
| ihct | Man page Source code |
| ihct_node_sizes | Source code |
| ihct_prune_tree | Source code |
| ihct_shuffled_dist | Source code |
| ihct_top_division | Source code |
| install_binaries | Man page Source code |
| is_tied_block | Source code |
| jaccard_index | Source code |
| knbclu | Source code |
| make.unique.2 | Source code |
| make_heights_monotone | Source code |
| map_bioregions | Man page Source code |
| mat_to_net | Man page Source code |
| net_to_mat | Man page Source code |
| netclu_beckett | Man page Source code |
| netclu_greedy | Man page Source code |
| netclu_infomap | Man page Source code |
| netclu_labelprop | Man page Source code |
| netclu_leadingeigen | Man page Source code |
| netclu_leiden | Man page Source code |
| netclu_louvain | Man page Source code |
| netclu_oslom | Man page Source code |
| netclu_walktrap | Man page Source code |
| nhclu_affprop | Man page Source code |
| nhclu_clara | Man page Source code |
| nhclu_clarans | Man page Source code |
| nhclu_dbscan | Man page Source code |
| nhclu_kmeans | Man page Source code |
| nhclu_pam | Man page Source code |
| nodes_to_hclust | Source code |
| one_tree | Source code |
| one_tree_on_worker | Source code |
| plot.bioregion.clusters | Source code |
| print.bioregion.clusters | Source code |
| print.bioregion.optimal.n | Source code |
| print.bioregion.pairwise | Source code |
| print.bioregion.partition.comparison | Source code |
| print.bioregion.site.species.metrics | Source code |
| prune_trees | Source code |
| rand_index | Source code |
| randomize_dist | Source code |
| rank_by_score | Source code |
| reformat_hierarchy | Source code |
| reorder | Source code |
| sbgc | Source code |
| similarity | Man page Source code |
| similarity_to_dissimilarity | Man page Source code |
| site_species_metrics | Man page Source code |
| site_species_subset | Man page Source code |
| start_workers | Source code |
| stop_workers | Source code |
| str.bioregion.clusters | Source code |
| str.bioregion.optimal.n | Source code |
| str.bioregion.site.species.metrics | Source code |
| summary.bioregion.clusters | Source code |
| summary.bioregion.site.species.metrics | Source code |
| tree_eval | Source code |
| tree_eval_cpp | Source code |
| tree_fit_score | Source code |
| variation_share | Source code |
| vegedf | Man page |
| vegemat | Man page |
| vegesf | Man page |
