biotic: Calculation of Freshwater Biotic Indices

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Calculates a range of UK freshwater invertebrate biotic indices including BMWP, Whalley, WHPT, Habitat-specific BMWP, AWIC, LIFE and PSI.

Author
Dr Rob Briers
Date of publication
2016-04-20 21:20:03
Maintainer
Dr Rob Briers <r.briers@napier.ac.uk>
License
GPL-3
Version
0.1.2
URLs

View on CRAN

Man pages

almond
River Almond invertebrate dataset
biotic-package
biotic: A package for calculating a range of UK freshwater...
braidburn
Braid Burn invertebrate dataset
calcAWIC
Calculate AWIC index
calcBMWP
Calculate BMWP indices for invertebrate samples
calcindex
Calculate biotic indices for invertebrate samples
calcLIFE
Calculate LIFE index
calcPool
Calculate Whalley 'Pool' habitat-specific BMWP indices for...
calcPSI
Calculate PSI index
calcRiffle
Calculate Whalley 'Riffle' habitat-specific BMWP indices for...
calcRiffPool
Calculate Whalley 'Riffle/Pool' habitat-specific BMWP indices
calcWhalley
Calculate Whalley revised BMWP indices for invertebrate...
calcWHPT
Calculate presence-only WHPT indices
calcWHPT_AB
Calculate abundance-weighted WHPT indices
checktaxa
Check taxa against scoring list
greenburn
Green Burn invertebrate dataset
transposedata
Transpose data layout

Files in this package

biotic
biotic/inst
biotic/inst/CITATION
biotic/inst/doc
biotic/inst/doc/biotic.html
biotic/inst/doc/biotic.R
biotic/inst/doc/biotic.Rmd
biotic/tests
biotic/tests/testthat.R
biotic/tests/testthat
biotic/tests/testthat/test-calcindex.r
biotic/tests/testthat/test-transposedata.r
biotic/NAMESPACE
biotic/data
biotic/data/almond.rda
biotic/data/braidburn.rda
biotic/data/greenburn.rda
biotic/R
biotic/R/biotic-package.r
biotic/R/sysdata.rda
biotic/R/calcscore.r
biotic/R/wrappers.r
biotic/R/processing.r
biotic/R/datsets.r
biotic/R/calcindex.r
biotic/R/zzz.R
biotic/vignettes
biotic/vignettes/biotic.Rmd
biotic/MD5
biotic/build
biotic/build/vignette.rds
biotic/DESCRIPTION
biotic/man
biotic/man/calcAWIC.Rd
biotic/man/braidburn.Rd
biotic/man/checktaxa.Rd
biotic/man/calcBMWP.Rd
biotic/man/calcWhalley.Rd
biotic/man/biotic-package.Rd
biotic/man/calcLIFE.Rd
biotic/man/almond.Rd
biotic/man/calcWHPT.Rd
biotic/man/calcPool.Rd
biotic/man/transposedata.Rd
biotic/man/calcindex.Rd
biotic/man/calcWHPT_AB.Rd
biotic/man/calcRiffle.Rd
biotic/man/greenburn.Rd
biotic/man/calcRiffPool.Rd
biotic/man/calcPSI.Rd