Description Usage Arguments Value Examples
Calculates WHPT abundance-weighted ASPT and N-taxa indices for invertebrate samples.
1 | calcWHPT_AB(df, type = "num")
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df |
A dataframe containing list of taxa in first column, followed by columns of abundances with sample names in header row. |
type |
Indicates format of data. Options are "num" for numeric data, "log" for integer log abundance categories (1-5) or "alpha" for alphabetic abundance categories (A-E). Default value is "num". |
A data frame consisting of columns of index values with samples in rows.
1 2 3 4 | # calculate the WHPT abundance-weighted indices for the River Almond dataset
# data are numeric abundances, so type is "num" (can be omitted)
calcWHPT_AB(almond, "num")
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