biotools: Tools for Biometry and Applied Statistics in Agricultural Science

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Tools designed to perform and work with cluster analysis (including Tocher's algorithm), discriminant analysis and path analysis (standard and under collinearity), as well as some useful miscellaneous tools for dealing with sample size and optimum plot size calculations. Mantel's permutation test can be found in this package. A new approach for calculating its power is implemented. biotools also contains the new tests for genetic covariance components.

Author
Anderson Rodrigo da Silva
Date of publication
2016-02-03 22:15:39
Maintainer
Anderson Rodrigo da Silva <anderson.agro@hotmail.com>
License
GPL (>= 2)
Version
3.0

View on CRAN

Man pages

aer
Apparent Error Rate
biotools-package
Tools for Biometry and Applied Statistics in Agricultural...
boxM
Box's M-test
brazil
Brazil Grid
confusionmatrix
Confusion Matrix
cov2pcov
Partial Covariance Matrix
creategroups
Creating Homogeneous Groups
D2.disc
Discriminant Analysis Based on Mahalanobis Distance
D2.dist
Pairwise Squared Generalized Mahalanobis Distances
distClust
Cluster Distance Matrix
findSubsample
Finding an Optimized Subsample
fitplotsize
Parameter Estimation of the Plot Size Model
garlicdist
Distances Between Garlic Cultivars
gencovtest
Testing Genetic Covariance
maize
Maize Data
mantelPower
Power of Mantel's Test
mantelTest
Mantel's Permutation Test
moco
Moco Cotton Data
multcor.test
Pairwise Correlation t-Test
optimumplotsize
Maximum Curvature Point for Optimum Plot Size
pathanalysis
Path Analysis, Simple and Under Collinearity
peppercorr
Correlations Between Pepper Variables
samplesize
Minimum Sample Size
sHe
Spatial Analysis of Gene Diversity
singh
Importance of Variables According to the Singh (1981)...
tocher
Tocher's Clustering

Files in this package

biotools
biotools/NAMESPACE
biotools/NEWS
biotools/data
biotools/data/peppercorr.rda
biotools/data/garlicdist.rda
biotools/data/moco.rda
biotools/data/maize.rda
biotools/data/brazil.rda
biotools/R
biotools/R/mantelPower.R
biotools/R/distClust.R
biotools/R/confusionmatrix.R
biotools/R/mantelTest.R
biotools/R/fitplotsize.R
biotools/R/D2.disc.R
biotools/R/raise.matrix.r
biotools/R/sHe.R
biotools/R/gencovtest.r
biotools/R/optimumplotsize.R
biotools/R/singh.R
biotools/R/sHe-old.R
biotools/R/tocher.R
biotools/R/multcor.test.r
biotools/R/boxM.R
biotools/R/cov2pcov.R
biotools/R/aer.R
biotools/R/samplesize.R
biotools/R/D2.dist.R
biotools/R/zz.R
biotools/R/creategroups.R
biotools/R/pathanalysis.R
biotools/R/findSubsample.R
biotools/MD5
biotools/DESCRIPTION
biotools/man
biotools/man/distClust.Rd
biotools/man/D2.dist.Rd
biotools/man/mantelPower.Rd
biotools/man/aer.Rd
biotools/man/moco.Rd
biotools/man/creategroups.Rd
biotools/man/cov2pcov.Rd
biotools/man/multcor.test.Rd
biotools/man/tocher.Rd
biotools/man/garlicdist.Rd
biotools/man/optimumplotsize.Rd
biotools/man/raise.matrix.rd
biotools/man/peppercorr.Rd
biotools/man/D2.disc.Rd
biotools/man/biotools-package.Rd
biotools/man/findSubsample.Rd
biotools/man/maize.Rd
biotools/man/sHe.Rd
biotools/man/gencovtest.Rd
biotools/man/pathanalysis.Rd
biotools/man/fitplotsize.Rd
biotools/man/samplesize.Rd
biotools/man/confusionmatrix.Rd
biotools/man/boxM.Rd
biotools/man/mantelTest.Rd
biotools/man/brazil.Rd
biotools/man/singh.Rd