Description Usage Arguments Details Value Examples
List2DF returns a data frame in the format internally required for bipartiteD3 where the first two columns list the interacting species, and subsequent columns list the link strengths in each site.
1 2 3 4 5 6 |
List |
An list of bipartite format matrices |
PrimaryLab |
Label for the primary level of the bipartite web, e.g. 'Plants' |
SecondaryLab |
Label for the secondary level of the bipartite web, e.g. 'Pollinators' |
SiteNames |
Vector of names for the different sites (list elements). By default takes names of input matrices if they exist. |
List2DF expects an list of multiple bipartite webs as may be created by the frame2webs(type.out='list') function in bipartite. This structure includes row and column names to indicate the species, and a named third dimension giving the names of each of the sites
Note a list of this format can be passed directly to bipartite_D3 since it will test for an list and apply List2DF() anyway.
A data.frame where the first column is the primary interactor, the second the secondary interactor and subsequent named columns detail the link strengths
1 2 3 4 5 6 7 8 | ## Not run: testdata <- data.frame(higher = c("bee1","bee1","bee1","bee2","bee1","bee3"),
lower = c("plant1","plant2","plant1","plant2","plant3","plant4"),
webID = c("meadow","meadow","meadow","meadow","bog","bog"), freq=c(5,9,1,2,3,7))
bipartite::frame2webs(testdata, type.out = 'list')-> SmallTestWeb
List2DF(SmallTestWeb)
## End(Not run)
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