OrderByCrossover: Find Species Order That Minimises Crossover

In bipartiteD3: Interactive Bipartite Graphs

Find Species Order That Minimises Crossover

Description

Find an order of species that is likely to minimise cross over. It builds upon the 'cca' method used in the bipartite package, but orders the compartments by size, which tends to give better effects.

Usage

OrderByCrossover(df)

Arguments

df	A network in data.frame format. (row names for primary layer, column names for secondary layer)

Value

A list containing 'PrimaryOrder' and 'SecondaryOrder', to be used with bipartite_d3()

Examples

## Not run: 

data(Safariland, package='bipartite')


S_orders <- OrderByCrossover(Safariland)

bipartite_D3(Safariland,
  filename = 'SF_sorted',
  SortPrimary = S_orders[[1]],
  SortSecondary = S_orders[[2]])

## End(Not run)

bipartiteD3 documentation built on Sept. 11, 2024, 7:25 p.m.