Man pages for bite
Bayesian Integrative Models of Trait Evolution
| Anolis_map | Anolis map of regimes |
| Anolis_traits | Anolis snout to vent length |
| Anolis_tree | Anolis phylogenetic tree |
| control_jive | Control tuning parameters of the jive algorithm |
| format_jive_traits | Format traits matrix to parse into 'make_jive' function |
| hpfun | Hyper-prior function |
| make_jive | Create a list that can be used as an input to mcmc_bite |
| marginal_lik | Calculate marginal likelihood by thermodynamic integration... |
| mcmc_bite | MCMC algorithm |
| plot_bf | Plots summary of Bayes Factors calculations |
| plot_hp | plot Hyper-prior function |
| plot_jive | plot input data from a jive object |
| plot_mcmc_bite | Plot trace and density from a log file |
| plot_post_beast | Plot posterior probabilities from beast |
| plot_pvo | Plots estimates of species traits distribution |
| sim_jive | Simulate JIVE process |
| sim_mte | Simulate MTE process |
| xml_bite | Write xml file with model |
