xml_bite: Write xml file with model
In bite: Bayesian Integrative Models of Trait Evolution

Description Usage Arguments Details Value Author(s)

Modifies a .xml file from beauti to include a model model in the Beast 2 analysis

1 2	xml_bite(model, xml, out = sprintf("%s_edited.xml", gsub(".xml", "", xml)))

`model`	an object of class "model" (see details)
`xml`	name of the output file that will store the log of MCMC chain
`out`	where to write the edited xml

This function takes a .xml file generated with Beauti and a model object generated with make_jive Only model objects that use models supported by the Beast implementation of model ("BM", c("BM", "sigma"), "WN", "OU", c("OU", "theta"), c("OU", "root"), c("OU", "root", "theta"))

no return value, called for side effects

No return value: Modifies the .xml file given in xml in the user's filespace.

Theo Gaboriau

bite documentation built on April 22, 2020, 5:09 p.m.